RNA id: XM_039822255.1


Basic Information

Item Value
RNA id XM_039822255.1
length 1295
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC120572804
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 32440648 ~ 32448330 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atctcagatgtttgaaggacagtctgtctctctgagctgtgaggaggacgacagctctgctggatggactctgaggaggaacacGACTCATGAAACCAGGACTCAGTGTGGAGATGGCTGGGGAAAACCTGCTAATTATTCCTGCAACATCAAACCCATGTTCTCATGGGACAGTGGAGTGtactggtgtgagtccagagagggagcaaccagtaacagcatcaacataactgtcactggtggaccagtgatcctgcagagtcctgtcctccctgtgacggagggagaagacctcactctgacctgtaaaacaaagaagtcctccaacctcccagctagtttctataaagatggctccttcatcaggactgagcctgcaggtcacatgaccatccaccatgtttccaggtctgatgaaggCCTCTACAAGTGTCTCATCAGAAGTGTTGGAGAGTctccacccagctgggtctctgtcacaggAGAGGAGGTTAAAGAGAAACCCCCAACTACAAGTCCTCCTTCACCTCCCTCTACTCCTGATTCTTCTCCACCTCCCTCTGTGTTGTGGTCCAATTCAAGCAGTGTTGTGATTAGGCTGGTTCTACTGTTTCTACTGGTTGTGCTGGTTCTACTGGTTTTgctagttctactggttgtgcTGGCTCTACTGGTGACAAGATACATCTGTAAGAAACCTAAAGCTGCTGACGCTGGAGATGATGACAACACAGACGACGTCACATACATTGATGTCCAAATATCATGTAACCTgcaacagccaatcagacgGAGCAGAGAGAGTGATCCTGCTGCAATCTACTCCGCAGTGAGAACAGAAGACGTCTGTTACGGACAAATAGTGATCAAAGAGAAGAAATCAAACAGGAAGAGAGagagagatccagctgcagtctactcagcagtgagaggagcagaaGATGTCAGTTATGGACAAATAGTTATCAAATCAAACAGGACCAGAGtTCATCATCGTAACCGACTTGAGTGGGCAAATGCTCACACTCAATGGCGTCTGGCACTTTAGAGAGGTGTTCTCTTCCCTGATgaatcctaaccctaactaagtaTATTTCCTCGACTTGTTCATGAACTggaccatgacttttttatgacggGCTTATGGGAAATGTTGATCATTGAATGCTGCTAAAAGCATACATTGAAGATGTAGAAGAGTTTTTTATCTAAACATATGAAGGGAGCCAAACAAATAACTGTTGAGAAACTCTTTATGTCTGCTGATGAAGTTTGTCTCAGTCTCTCATTTAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200523 lncRNA downstream 39830 31949319 ~ 32401325 (-) True G148312
XR_005641630.1 lncRNA downstream 48947 32388827 ~ 32392208 (-) True LOC120573058
TU200645 lncRNA downstream 84006 32356458 ~ 32357149 (-) True G148409
TU200524 lncRNA downstream 96929 31950479 ~ 32344226 (-) True G148313
TU200580 lncRNA downstream 98839 31924383 ~ 32342316 (-) True G148360
TU200520 lncRNA upstream 44654 32492984 ~ 32493804 (-) True G148310
TU200654 lncRNA upstream 58230 32506560 ~ 32517535 (-) True G148416
XR_005641632.1 lncRNA upstream 90989 32539319 ~ 32540537 (-) True LOC120573060
TU200689 lncRNA upstream 91043 32539373 ~ 32540466 (-) False LOC120573060
TU200514 lncRNA upstream 101538 32549868 ~ 32673155 (-) False G148308
XM_039822253.1 mRNA downstream 21576 32381753 ~ 32419579 (-) True LOC120572803
XM_039822254.1 mRNA downstream 21576 32409343 ~ 32419579 (-) False LOC120572803
XM_039821928.1 mRNA downstream 65631 32132336 ~ 32375524 (-) True LOC120572607
XM_039822164.1 mRNA downstream 834313 31435815 ~ 31606842 (-) False LOC120572747
XM_039822248.1 mRNA upstream 28396 32476726 ~ 32486353 (-) True LOC120572800
XM_039822249.1 mRNA upstream 28398 32476728 ~ 32486353 (-) False LOC120572800
XM_039822269.1 mRNA upstream 155168 32603498 ~ 32811604 (-) False LOC120572814
XM_039822272.1 mRNA upstream 155168 32603498 ~ 32612195 (-) False LOC120572814
XM_039822270.1 mRNA upstream 155168 32603498 ~ 32612195 (-) True LOC120572814
TU200650 other downstream 65606 32373078 ~ 32375549 (-) False LOC120572607
TU200566 other downstream 273780 32163056 ~ 32167375 (-) False LOC120572607
TU200397 other downstream 703473 31717372 ~ 31737682 (-) False G148246
TU200398 other downstream 832669 31607051 ~ 31608486 (-) False G148246
TU199667 other downstream 1609835 30829970 ~ 30831320 (-) False LOC120572603
TU200707 other upstream 249991 32698321 ~ 32700405 (-) True G148453
TU200744 other upstream 282750 32731080 ~ 32755361 (-) True G148472
TU200833 other upstream 497015 32945345 ~ 32945806 (-) True G148536
TU200787 other upstream 505440 32953770 ~ 32957919 (-) False G148509
unassigned_transcript_715 other upstream 753771 33202101 ~ 33202172 (-) True trnag-ucc_11

Expression Profile