RNA id: XM_039821928.1


Basic Information

Item Value
RNA id XM_039821928.1
length 1538
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC120572607
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 32132336 ~ 32375549 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGGATATacactgaaaaaaagtcaaGACATCATTTCACCGACTGTTAGGATGGAGGAGACATCTCTACTCTGGCTGCTCTTTCTGACCTCACTGCTGAGCTGCCCAACAAACCAAGcctctctgactgtgagtccCAGCAGCTCTCAGCTGTTTAAAGATGaatctgtctctctgagctgtgaggaggacgacagctcagctggatggactctgaggaggaacacGACCATAAAAACCAGGACTCAGTGTGGAGATGGCTGGGGAAGACCTGCTGGTTCTTCCTGTAACATCAGCTACATGGACCCAGTGGACAGTGGAGTttactggtgtgagtccagagagggagcaaccagtaacagcatcaacatcactgtcactggtggaccagtgatcctgcagagtcctgtcctccctgtgatggagggagaagacctcactctgacctgtaaaacagagacgtcctccaacctcccagctagtttctataaagatggctccttcatcaggaatgagcctgcaggtcacatgaccatccacaATGTTTCCAGGTCTGCTGAAGGCCTCTACAAGTGTCacatcagcagtgttggagagtctccacccagctgggtctctgtcacaggtgAGGAGGTTAAAGaGAAACACACGACTACAAGTCCTCCTACATCCTCCACCAGCTCTGGCTTCACCACAGTTTCAGTCGGTGTACTggttctcctggttctcctggttctcctggttttcctggttctcctggttctcctggtTCTACGATGCATCCGTAGGAAAGCTAAAGCTCAAGATGAAGCTGGAGATGGTGATGTCACATACAGTGATGTCACAATATCACCtaacctgcagcagccaatcagacggAGCAGAGAGAGTGATCCTGCTGCAATCTACTCCGGAGTGAGAACAGAAGACGTCTGTAACGGACAAATAGTGATCAAAGCCAAGAAGACAAAAAGGAAGAGAGAGAGTGATCCTGCTGCAATCTACTCCGGAGTGAGAACAGAAGACGTCTGTAACGGACAAATAGTGATCAAAGACAAGAAGACAAAAAGGAAGAGAGagaGTGATCCAGCTGCAATCTACTCTGGGGtgatcaaagacaagaaaacaaACAGGAAGAGAGAGAGTGATCCAGCTGCAATCTACTCTGGGGtgatcaaagacaagaaaacaaACAGGAAGAGAGAGCCTCCAGCAGAGCCAGAGGTCCTCTACTCCTCATAGAGGAAGACCTGAACACCATCACACCAGTCCAACCAGTGGAGTCCAGCCGGCCAATCACTGGTCCCCAGAGACCCTCACATCTACATCTGTATAGCCCTGGTGTATTTGTCGGAGATTTTAAACTTTGTGAGCACAAAAAGGTCAGTCCGGTCATCCAACCAACTGGCTTTAGAAGACCCAAGGTCGAGGTACAAACTGTGCGGTCAGCCCTatattcccacagccctatgtttccacatttctaagatttttcttaaagctccattgtatAACATTTGTAGTTGtttattatcaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200605 lncRNA downstream 28878 32041106 ~ 32103458 (-) True G148383
TU200596 lncRNA downstream 132486 31998888 ~ 31999850 (-) True G148374
XR_005641549.1 lncRNA downstream 154130 31977555 ~ 31978206 (-) True LOC120572976
TU200525 lncRNA downstream 181973 31487564 ~ 31950363 (-) True G148314
TU200582 lncRNA downstream 186948 31932994 ~ 31945388 (-) False G148362
XR_005641630.1 lncRNA upstream 13303 32388827 ~ 32392208 (-) True LOC120573058
TU200520 lncRNA upstream 117460 32492984 ~ 32493804 (-) True G148310
TU200654 lncRNA upstream 131036 32506560 ~ 32517535 (-) True G148416
XR_005641632.1 lncRNA upstream 163795 32539319 ~ 32540537 (-) True LOC120573060
TU200689 lncRNA upstream 163849 32539373 ~ 32540466 (-) False LOC120573060
XM_039822251.1 mRNA downstream 458712 31277977 ~ 31673624 (-) True LOC120572802
XM_039822162.1 mRNA downstream 508523 31435815 ~ 31623813 (-) False LOC120572747
XM_039822159.1 mRNA downstream 508523 31435815 ~ 31623813 (-) True LOC120572747
XM_039822160.1 mRNA downstream 508523 31435815 ~ 31623813 (-) False LOC120572747
XM_039822161.1 mRNA downstream 508524 31435815 ~ 31623812 (-) False LOC120572747
XM_039822253.1 mRNA upstream 6229 32381753 ~ 32419579 (-) True LOC120572803
XM_039822254.1 mRNA upstream 33819 32409343 ~ 32419579 (-) False LOC120572803
XM_039822256.1 mRNA upstream 65124 32440648 ~ 32448330 (-) True LOC120572804
XM_039822255.1 mRNA upstream 65631 32441155 ~ 32448330 (-) False LOC120572804
XM_039822257.1 mRNA upstream 68404 32443928 ~ 32448330 (-) False LOC120572804
TU200397 other downstream 394654 31717372 ~ 31737682 (-) False G148246
TU200398 other downstream 523850 31607051 ~ 31608486 (-) False G148246
TU199667 other downstream 1301016 30829970 ~ 30831320 (-) False LOC120572603
TU199644 other downstream 1455339 30675187 ~ 30676997 (-) False G147699
XR_005641506.1 other downstream 1622310 30503116 ~ 30510026 (-) False LOC120572891
TU200707 other upstream 322797 32698321 ~ 32700405 (-) True G148453
TU200744 other upstream 355556 32731080 ~ 32755361 (-) True G148472
TU200833 other upstream 569821 32945345 ~ 32945806 (-) True G148536
TU200787 other upstream 578246 32953770 ~ 32957919 (-) False G148509
unassigned_transcript_715 other upstream 826577 33202101 ~ 33202172 (-) True trnag-ucc_11

Expression Profile