RNA id: TU200580



Basic Information


Item Value
RNA id TU200580
length 341
lncRNA type sense_over
GC content 0.48
exon number 3
gene id G148360
representative True

Chromosome Information


Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 31924383 ~ 32342316 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ACCTGCTGGCTCTGTTACCTGCAGACTGATGATTCTGATGATTCCGACTTTTTCAGAGTCAAGGGTTTTAACTCGACACTCGTATCTTCCAGCGTCGTGTCTGCTGACATTCTTCAGAGTTAATGACACGTCTCCGTCCTTCCTATGTATGCCCATCATCTCCACCCTGCCCTTAAAGAATGGATGCTGCTGGTTGTATGGATCCAAGATTTCATCTCTGTATAAGAAGACACACTGCCCTAGGTCAGGTTTGCTCCACATAAGAACACTGATGGAGGAATCAGCAGCCCGACATTGCAGAAGGGCATCATTTCCAGGGTGCACTACCACAATCAGGTctg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005641626.1 lncRNA downstream 24581 31898840 ~ 31899802 (-) True LOC120573055
TU200553 lncRNA downstream 44565 31655795 ~ 31879818 (-) True LOC120573013
TU200557 lncRNA downstream 44664 31793125 ~ 31879719 (-) False LOC120573013
TU200493 lncRNA downstream 50768 31727902 ~ 31873615 (-) True G148293
XR_005641611.1 lncRNA downstream 125399 31794804 ~ 31798984 (-) True LOC120573038
TU200645 lncRNA upstream 14142 32356458 ~ 32357149 (-) True G148409
XR_005641630.1 lncRNA upstream 46511 32388827 ~ 32392208 (-) True LOC120573058
TU200520 lncRNA upstream 150668 32492984 ~ 32493804 (-) True G148310
TU200654 lncRNA upstream 164244 32506560 ~ 32517535 (-) True G148416
XR_005641632.1 lncRNA upstream 197003 32539319 ~ 32540537 (-) True LOC120573060
XM_039822251.1 mRNA downstream 250759 31277977 ~ 31673624 (-) True LOC120572802
XM_039822162.1 mRNA downstream 300570 31435815 ~ 31623813 (-) False LOC120572747
XM_039822159.1 mRNA downstream 300570 31435815 ~ 31623813 (-) True LOC120572747
XM_039822160.1 mRNA downstream 300570 31435815 ~ 31623813 (-) False LOC120572747
XM_039822161.1 mRNA downstream 300571 31435815 ~ 31623812 (-) False LOC120572747
XM_039822253.1 mRNA upstream 39437 32381753 ~ 32419579 (-) True LOC120572803
XM_039822254.1 mRNA upstream 67027 32409343 ~ 32419579 (-) False LOC120572803
XM_039822256.1 mRNA upstream 98332 32440648 ~ 32448330 (-) True LOC120572804
XM_039822255.1 mRNA upstream 98839 32441155 ~ 32448330 (-) False LOC120572804
XM_039822257.1 mRNA upstream 101612 32443928 ~ 32448330 (-) False LOC120572804
TU200397 other downstream 186701 31717372 ~ 31737682 (-) False G148246
TU200398 other downstream 315897 31607051 ~ 31608486 (-) False G148246
TU199667 other downstream 1093063 30829970 ~ 30831320 (-) False LOC120572603
TU199644 other downstream 1247386 30675187 ~ 30676997 (-) False G147699
XR_005641505.1 other downstream 1414357 30503116 ~ 30510026 (-) True LOC120572891
TU200650 other upstream 30762 32373078 ~ 32375549 (-) False LOC120572607
TU200707 other upstream 356005 32698321 ~ 32700405 (-) True G148453
TU200744 other upstream 388764 32731080 ~ 32755361 (-) True G148472
TU200833 other upstream 603029 32945345 ~ 32945806 (-) True G148536
TU200787 other upstream 611454 32953770 ~ 32957919 (-) False G148509

Expression Profile