RNA id: TU200836



Basic Information


Item Value
RNA id TU200836
length 832
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id G148537
representative True

Chromosome Information


Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 32947734 ~ 32949183 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TTCCGAGAATAAACTTCGATCCTGTTTAACGAACGGCCAAGGCAGAACGCTAACGCGTGCTAAAGGCTAGAAGGTAGCCTTGGGATAGCCGAAAATATTTttgacttttattctgaaaatattcagacttttaggTTAAATAATCATTAACATCCCCAATGTGAGCTCTGACCCTGGTTCTGaacctggttctggttctgtttAACAGTGTGAGAGTGATGTCTGACCCTGGGTCTGGGTCTGGTTCTGGTTGTGTCTGACAGTGTGATATCTGACCCTGGGTCTGGTTCTGGTTGTGTCTGACAGTGTGATATCTGACCCTGGGTCTGGTTCTGGTTGTGTCTAACAGTGTGATATCTGACCCTGGGTCTGGGTCTGGTTCTGGTTGTGTCTGACAGTGTGATATCTGACCCTGGGTCTGGTTCTGGTTGTGTCTAACAGTGTGATGTCTGGGTCTGGTTCTGGTTGTGTCTGACAGTGTGATATCTGACCCTgggtctggttctggttctgtaACAGTGTGATATCTGACCCTGGttctggttctgtaACAGTGTGATATCTGACCCTgggtctggttctggttctgtaACAGTGTGATATCTGACCCTgggtctggttctggttctggcgGAGCTTTTTGgtgatgttctgctgctgcaggttCAGGATTCTCTGCTGTTCCTGTTTCAGCCAGCGGAGTCGGCCTCTCCTGAAGGCCGGGTCCTCGTCCATCAGGCGCTTCACTCGGACCTCCGGCGGCCGCGTGGCCGCGCCGTCTCTCGGGGGCGACTCGCCGCCGCCGTCTTCTTCGTCCTCTTCGCCGTTGATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU200830 lncRNA downstream 7895 32935073 ~ 32939839 (-) True G148533
TU200801 lncRNA downstream 9156 32885845 ~ 32938578 (-) True G148510
TU200799 lncRNA downstream 13913 32881804 ~ 32933821 (-) False G148509
TU200789 lncRNA downstream 31915 32831676 ~ 32915819 (-) False G148509
TU200743 lncRNA downstream 114451 32725833 ~ 32833283 (-) False G148471
TU200793 lncRNA upstream 2814 32951997 ~ 32956711 (-) False G148509
TU200795 lncRNA upstream 2814 32951997 ~ 32957919 (-) True G148509
TU200798 lncRNA upstream 2814 32951997 ~ 32962233 (-) False G148509
TU200786 lncRNA upstream 4587 32953770 ~ 32957919 (-) False G148509
TU200791 lncRNA upstream 4587 32953770 ~ 32957071 (-) False G148509
XM_039822269.1 mRNA downstream 136130 32603498 ~ 32811604 (-) False LOC120572814
XM_039822265.1 mRNA downstream 284924 32652305 ~ 32662810 (-) True LOC120572810
XM_039822272.1 mRNA downstream 335539 32603498 ~ 32612195 (-) False LOC120572814
XM_039822270.1 mRNA downstream 335539 32603498 ~ 32612195 (-) True LOC120572814
XM_039822248.1 mRNA downstream 461381 32476726 ~ 32486353 (-) True LOC120572800
XM_039822227.1 mRNA upstream 36339 32985522 ~ 32995763 (-) True LOC120572789
XM_039822193.1 mRNA upstream 57397 33006580 ~ 33034300 (-) True LOC120572766
XM_039822448.1 mRNA upstream 100176 33049359 ~ 33055500 (-) True LOC120572924
XM_039822223.1 mRNA upstream 114013 33063196 ~ 33073135 (-) True LOC120572785
XM_039822201.1 mRNA upstream 135155 33084338 ~ 33090657 (-) True LOC120572772
TU200833 other downstream 1928 32945345 ~ 32945806 (-) True G148536
TU200744 other downstream 192373 32731080 ~ 32755361 (-) True G148472
TU200707 other downstream 247329 32698321 ~ 32700405 (-) True G148453
TU200650 other downstream 572185 32373078 ~ 32375549 (-) False LOC120572607
TU200566 other downstream 780359 32163056 ~ 32167375 (-) False LOC120572607
TU200787 other upstream 4587 32953770 ~ 32957919 (-) False G148509
unassigned_transcript_715 other upstream 252918 33202101 ~ 33202172 (-) True trnag-ucc_11
TU200865 other upstream 288587 33237770 ~ 33312272 (-) False corin
TU200861 other upstream 323948 33273131 ~ 33283874 (-) False corin
TU200862 other upstream 323948 33273131 ~ 33283874 (-) False corin

Expression Profile