RNA id: XM_039822227.1


Basic Information

Item Value
RNA id XM_039822227.1
length 1508
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC120572789
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 32985522 ~ 32995763 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTAGTCGGAGAAAAACACTATTACAGATCACAGCCACCAACTGCTCCCTAGTCCTAGCGTTgaggaaattatctaaatatatatattactatattataCTGTCAGAGAGAACAGTGTCGGGATACAGAGACTGCAGCAGATCACCTCTCTGTCAGACCTCATGGTTCCATTAATACTCCTGTTGATCCTTCTGACTGAAGCAGCTTCGTacCTACCTGTGGTACCAGTGCGCCCTGAAGGTGATGTCATTCTGTCATGTCAGGCTGCTGATCCCTTCATCAGAGCTATAGAGTGGACCAGAGCTGACCTAAAGACAGATAACGTCCTCTTATACACAGATGGACACTTGAATACAACCCACCAGCATCCATCCTATAAGGGCAGGGTggagctggtggacagagatCTGAAGGATGGAAACATGTCTTTAATTCTGAAGAATGTGAACATTAACGACAGTGGAACATACAAGTGTCAAGTTAAAACCAATGATACTGACCGAATCAAAACCATCAGCACCATCCGTCTGCAGGTTCCAGacCAGATTGTAGTTACAGTGGATCCTGGAGATGATGCCATTCTGCCATGTCACGCTGCTGATTCCTCCATCATATTTGTAGAGTGGAGCAGACCTGGCCTGAAGCCAGATGACATCCTCTATTACAGAAATGAATACTTGAATACAACCTACCAGCATCCAGACTATAAGGACAGGGTggagctggtggacagagatCTGAAGGACAGAGACGCGTCTTTAATTCTGAAGAATGTGTGCAGACATGACACTGAAACATACGAGTGTCGAGTTAAAACCAGTCGTTCAGGACGTCCAAAGGGAGACACTGACTATTACCAAATCAGAACCATCTGTCTGCAGGTTACAGaccTGACTGTAACAGTGCGCCCTGGAGATGATGTCATTCTGCCATGTCACGCTGCTGATTCCTCCATCAGAGCTGTAAAGTGGACCAGACCTGACCTGGAGCCAAATATCGTCCTATTATACAGCGATGGACACCTGGAGAAAGACGACCAGAATCCATCCTTTAAGGACAGGGTggagctggtggacagagatCTGAAGGACAGAGACGCGTCATTAATTCTGAAGAATGTGAGCAGACACGACACTGGAATATACGAGTGTCGCGTTAAAACCGATGGTTCAACACGTAAAAAGAGAGGCATTGAGCCAGTCAGAATCATCCGTCTGCAGGTTACAGAGCCAGCAGGTTCCAAGAAAGGAAACTATCTCATATACGTTGTGGCAGCAGGTGTTGGTCTGATTTTTCTAACTGTTGCAGTAGTTGGTgtgatatataaaatatgtaataacAGGAGATCAGGacaacctgctgctgctgcagcttcgACCGATCAGCTCCTCGACAACTCAGAGCTCTTTACAGCTGACTAGTTTCTCATGTCCTGTATGTATAAATTGATTTTCATTACTTCTGTGGGTGTGAGGTCATATACAGATCTGCTATGTGGTTTGCCCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200842 lncRNA downstream 9339 32973356 ~ 32976183 (-) True G148543
TU200798 lncRNA downstream 23289 32951997 ~ 32962233 (-) False G148509
TU200796 lncRNA downstream 27603 32861177 ~ 32957919 (-) False G148509
TU200795 lncRNA downstream 27603 32951997 ~ 32957919 (-) True G148509
TU200786 lncRNA downstream 27603 32953770 ~ 32957919 (-) False G148509
TU200853 lncRNA upstream 122204 33117967 ~ 33118250 (-) False LOC120572612
TU200533 lncRNA upstream 136509 33132272 ~ 33132502 (-) False LOC120572612
XR_005641607.1 lncRNA upstream 163530 33159293 ~ 33175504 (-) True LOC120573033
TU200875 lncRNA upstream 179867 33175630 ~ 33261679 (-) True G148558
TU200880 lncRNA upstream 181623 33177386 ~ 33197577 (-) True G148563
XM_039822269.1 mRNA downstream 173918 32603498 ~ 32811604 (-) False LOC120572814
XM_039822265.1 mRNA downstream 322712 32652305 ~ 32662810 (-) True LOC120572810
XM_039822272.1 mRNA downstream 373327 32603498 ~ 32612195 (-) False LOC120572814
XM_039822270.1 mRNA downstream 373327 32603498 ~ 32612195 (-) True LOC120572814
XM_039822248.1 mRNA downstream 499169 32476726 ~ 32486353 (-) True LOC120572800
XM_039822193.1 mRNA upstream 10817 33006580 ~ 33034300 (-) True LOC120572766
XM_039822448.1 mRNA upstream 53596 33049359 ~ 33055500 (-) True LOC120572924
XM_039822223.1 mRNA upstream 67433 33063196 ~ 33073135 (-) True LOC120572785
XM_039822201.1 mRNA upstream 88575 33084338 ~ 33090657 (-) True LOC120572772
XM_039821933.1 mRNA upstream 114436 33110199 ~ 33132675 (-) True LOC120572612
TU200787 other downstream 27603 32953770 ~ 32957919 (-) False G148509
TU200833 other downstream 39716 32945345 ~ 32945806 (-) True G148536
TU200744 other downstream 230161 32731080 ~ 32755361 (-) True G148472
TU200707 other downstream 285117 32698321 ~ 32700405 (-) True G148453
TU200650 other downstream 609973 32373078 ~ 32375549 (-) False LOC120572607
unassigned_transcript_715 other upstream 206338 33202101 ~ 33202172 (-) True trnag-ucc_11
TU200865 other upstream 242007 33237770 ~ 33312272 (-) False corin
TU200861 other upstream 277368 33273131 ~ 33283874 (-) False corin
TU200862 other upstream 277368 33273131 ~ 33283874 (-) False corin
TU200864 other upstream 277368 33273131 ~ 33283874 (-) False corin

Expression Profile