RNA id: XM_039822265.1


Basic Information

Item Value
RNA id XM_039822265.1
length 1587
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC120572810
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 32652305 ~ 32662810 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCGTCCAGCTGTGCACAACCTTATTGTTCATTTTGATGTTTTAAAGAAAACCTCAACAGTGACACATGACGAGGAAGGAGGTGGGCTTTACTGTTACTGTGTGTCTGGTTAGACACTAAAGTGCTGATCTCAGATGACCAACATTTCAAATGGAGGAACCATCTCTACAGCTGCTGCTGGTTGTGATCTCACTGCTGAGCTGCACAACAAACCAAGcctctctgactgtgagtcccagcagctctcagatgtttgaaggagagtctgtctctctgagctgtgaggaggacgacagctctgctggatggactctgaggaggaacacaACCAGAGAAACCAGGACTCAGTGTGGACCTGACTGGGGAAGAAATGCCGGTTCTTCCTGTAAAATCAGCTTAATTATTCCAGAGGACAGTGGAGTttactggtgtgagtccagagagggagcaaccagtaacagcatcagcatcactgtcactggtggaccagtgatcctgcagagtcctgtcctccctgtgatggagggagaagacctcactctgacctgtaaaacaaagacgtcctccaacctcccagctggtttctataaagatggctccttcttcaggactgagcctgcaggtcacatgaccatccaccatgtttccaggtctgatgaaggcctctacaagtgcaacatcagcagtgttggagagtctccacccagctgggtctctgtcacagGGAAAAGTCCTCCTACATCCCCCTCTAGTCCTGattccttccctcctccctccgtATTGTGGTCTGCTGCTTCAGTCGGTGTTCTGATTGGGATTGTTCAACTGGTTGTGCTGGTTCTACTGGTGAGACGATGCGTCCGTAGGAAAAGGAAAGCTGTTGACGCTGGAGATGATGACAACACAGATGACATCACATACACTGATGTCCAAATAGCACGTAACCTGCAAGTGCCAATCAGACGGAGTAGAGAGAGTGATCCTGCTACAATCTACTCCGGAGTGAGAACAACAGATGTCAGTTATGGACAAATGGCGATCAAAGAGATGAAATCAAACAGGAAGAGAGAGTCTCCAGCAGAGCCAGAGGTCCTCTACTCCTCACTGAGGAAGACCTGAACACCATCACACCAGTCCAACCAGTGGAGTCCAGCCGGCCAATCACTGGTCCCCAGAGACCCTCACACCTGAGAACATGCATGTGTTTGATTTCATATCTGTATATGTTAAAGCTAAATGAGATTAATGCAGCTACAAATAGACAAACAACTCACATTAAGAACATGTTTGCATTCTTTAGATGTgtttcgttaaaaaaaaaaaaactatgtcaTAGATTTGTTCCTCTATAACTGTTTCATAACGGTGCACAACACCAACAAATATCTACTAAACAGAGTCTAATGATAATAACTATTTAATgatatttgtattgtatttaaacTCTGGTGTCAATGGTTGTTTTCCTCGTGTGGTTCTGTGGGTTTCACATCTCTGACAGATGGAACATTTGTTCTGGTTGTGGCTAACCGATCTACGCTTCTCTTCAGCGCAGAGAACTGAGAATAAACACCGCAGAATATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200730 lncRNA downstream 21830 32624172 ~ 32630475 (-) False LOC120572954
TU200733 lncRNA downstream 21830 32624172 ~ 32630475 (-) False LOC120572954
TU200731 lncRNA downstream 21830 32624172 ~ 32630475 (-) False LOC120572954
TU200732 lncRNA downstream 21830 32624172 ~ 32630475 (-) True LOC120572954
XR_005641516.1 lncRNA downstream 21917 32624171 ~ 32630388 (-) False LOC120572954
TU200711 lncRNA upstream 10720 32673530 ~ 32700405 (-) False G148453
XR_005641628.1 lncRNA upstream 16095 32678905 ~ 32679286 (-) True LOC120573056
TU200760 lncRNA upstream 18258 32681068 ~ 32682067 (-) True G148485
XR_005641617.1 lncRNA upstream 33300 32696110 ~ 32698436 (-) True LOC120573043
TU200747 lncRNA upstream 51817 32714627 ~ 32723816 (-) True LOC120573002
XM_039822272.1 mRNA downstream 40110 32603498 ~ 32612195 (-) False LOC120572814
XM_039822270.1 mRNA downstream 40110 32603498 ~ 32612195 (-) True LOC120572814
XM_039822248.1 mRNA downstream 165952 32476726 ~ 32486353 (-) True LOC120572800
XM_039822249.1 mRNA downstream 165952 32476728 ~ 32486353 (-) False LOC120572800
XM_039822256.1 mRNA downstream 203975 32440648 ~ 32448330 (-) True LOC120572804
XM_039822227.1 mRNA upstream 322712 32985522 ~ 32995763 (-) True LOC120572789
XM_039822193.1 mRNA upstream 343770 33006580 ~ 33034300 (-) True LOC120572766
XM_039822448.1 mRNA upstream 386549 33049359 ~ 33055500 (-) True LOC120572924
XM_039822223.1 mRNA upstream 400386 33063196 ~ 33073135 (-) True LOC120572785
XM_039822201.1 mRNA upstream 421528 33084338 ~ 33090657 (-) True LOC120572772
TU200650 other downstream 276756 32373078 ~ 32375549 (-) False LOC120572607
TU200566 other downstream 484930 32163056 ~ 32167375 (-) False LOC120572607
TU200397 other downstream 914623 31717372 ~ 31737682 (-) False G148246
TU200398 other downstream 1043819 31607051 ~ 31608486 (-) False G148246
TU199667 other downstream 1820985 30829970 ~ 30831320 (-) False LOC120572603
TU200707 other upstream 35511 32698321 ~ 32700405 (-) True G148453
TU200744 other upstream 68270 32731080 ~ 32755361 (-) True G148472
TU200833 other upstream 282535 32945345 ~ 32945806 (-) True G148536
TU200787 other upstream 290960 32953770 ~ 32957919 (-) False G148509
unassigned_transcript_715 other upstream 539291 33202101 ~ 33202172 (-) True trnag-ucc_11

Expression Profile