RNA id: TU200760


Basic Information

Item Value
RNA id TU200760
length 702
lncRNA type intronic
GC content 0.40
exon number 2
gene id G148485
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 32681068 ~ 32682067 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

actctagagtcatatatatgtgagagaaacaaagcgagtagcgactctagagtcatatatatgtgagagaaacaaagcgagtagcgactctagagtcatatatatgtgagagaaacaaagcgagtagagactctagagtcatatatatgtgagagaaacaaagcgagtagagactctagagtcatatatatgtgagagaaacaaagcgagtagcgactctagagtcatatatatgtgagagaaacaaagcgagtagcgactctagagtcatatatatgtgagagaaacaaagcgagtagagactctagagtcatatatatgtgagagaaacaaagcgagtagagactctagagtcatatatatgtgagagaaacaaagcgagtagagactctagagtcatatatatgtgagagaaacaaagcgagtagagactctagagtcatatatatgtgagagaaacaaagcgagtagcgactctagagtcatatatatgtgagagaaacaaagcgagtagcgactctagagtcatatatatgtgagagaaacaaagcgagtagcgactctagagtcatatatatgtgaccacggtgggaaatctggagcggtaaacgttaactatctctttgatatcatgttgttcacggagacggagaaccagCAAATGCGTCGGGGATATGCGGGGATATAGCAATGGGAAAAGCA

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641628.1 lncRNA downstream 1782 32678905 ~ 32679286 (-) True LOC120573056
TU200514 lncRNA downstream 7913 32549868 ~ 32673155 (-) False G148308
TU200714 lncRNA downstream 26253 32652556 ~ 32654815 (-) False G148453
TU200730 lncRNA downstream 50593 32624172 ~ 32630475 (-) False LOC120572954
TU200733 lncRNA downstream 50593 32624172 ~ 32630475 (-) False LOC120572954
XR_005641617.1 lncRNA upstream 14043 32696110 ~ 32698436 (-) True LOC120573043
TU200747 lncRNA upstream 32560 32714627 ~ 32723816 (-) True LOC120573002
XR_005641577.1 lncRNA upstream 33452 32715519 ~ 32716362 (-) False LOC120573002
TU200743 lncRNA upstream 43766 32725833 ~ 32833283 (-) False G148471
TU200781 lncRNA upstream 89255 32771322 ~ 32773714 (-) True G148505
XM_039822265.1 mRNA downstream 18258 32652305 ~ 32662810 (-) True LOC120572810
XM_039822272.1 mRNA downstream 68873 32603498 ~ 32612195 (-) False LOC120572814
XM_039822270.1 mRNA downstream 68873 32603498 ~ 32612195 (-) True LOC120572814
XM_039822248.1 mRNA downstream 194715 32476726 ~ 32486353 (-) True LOC120572800
XM_039822249.1 mRNA downstream 194715 32476728 ~ 32486353 (-) False LOC120572800
XM_039822227.1 mRNA upstream 303455 32985522 ~ 32995763 (-) True LOC120572789
XM_039822193.1 mRNA upstream 324513 33006580 ~ 33034300 (-) True LOC120572766
XM_039822448.1 mRNA upstream 367292 33049359 ~ 33055500 (-) True LOC120572924
XM_039822223.1 mRNA upstream 381129 33063196 ~ 33073135 (-) True LOC120572785
XM_039822201.1 mRNA upstream 402271 33084338 ~ 33090657 (-) True LOC120572772
TU200650 other downstream 305519 32373078 ~ 32375549 (-) False LOC120572607
TU200566 other downstream 513693 32163056 ~ 32167375 (-) False LOC120572607
TU200397 other downstream 943386 31717372 ~ 31737682 (-) False G148246
TU200398 other downstream 1072582 31607051 ~ 31608486 (-) False G148246
TU199667 other downstream 1849748 30829970 ~ 30831320 (-) False LOC120572603
TU200707 other upstream 16254 32698321 ~ 32700405 (-) True G148453
TU200744 other upstream 49013 32731080 ~ 32755361 (-) True G148472
TU200833 other upstream 263278 32945345 ~ 32945806 (-) True G148536
TU200787 other upstream 271703 32953770 ~ 32957919 (-) False G148509
unassigned_transcript_715 other upstream 520034 33202101 ~ 33202172 (-) True trnag-ucc_11

Expression Profile