RNA id: XM_039824183.1



Basic Information


Item Value
RNA id XM_039824183.1
length 493
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC120574101
representative True

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5991937 ~ 5995189 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AGGTGAAACCTGATCTTGGGTGTCTTGCGTGACATTCTTGAGAAATTTAACACCTTTTCGTTTGACTCGCCTCTCCCACGGTGTGTTATCTCAGTATGACCTCAATTGGCCAAAAAGGTACAAAACCAGCAAAGACAGAGGTGAGGGCAGTAGAAAGCCCTCGGGTACTGTCCCTGTCGCTGCCTCAGCGTGTTGATCCTGGACCAGCCTTTCTGTGCAGCTATCACAGCCTGGGCTGCTGTCTTCGCACCAACATATTTCCAGGTGCTCCTTTAACATGGAAATCCCTCTCCAGGGACTCTTACATCAGCCACCCTCCGACTGCCTGGCCTCCAGACCCCCACCTCTGGTACGGCCACAAGACCGATGAAATGGTCCAGTGGACAGAGAGAAACATCGTGAACCAGAAGCTCGACAAGTCACTGacggaaatgaaaaaaaaaagcaccgcATAATTAAGCCCTGCTTACCAACCCGGAGACCACAACACACG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU206379 lncRNA downstream 42442 5949277 ~ 5949495 (-) True G152330
TU206378 lncRNA downstream 42918 5948814 ~ 5949019 (-) True G152329
TU206347 lncRNA downstream 117629 5873777 ~ 5874308 (-) True G152302
TU206342 lncRNA downstream 199762 5791967 ~ 5792175 (-) True G152298
TU206322 lncRNA downstream 208576 5737931 ~ 5783361 (-) True G152280
TU206417 lncRNA upstream 14058 6009247 ~ 6010851 (-) True G152362
TU206467 lncRNA upstream 114550 6109739 ~ 6109942 (-) True G152400
TU206470 lncRNA upstream 116543 6111732 ~ 6111935 (-) True G152403
TU206473 lncRNA upstream 125259 6120448 ~ 6120667 (-) True G152406
TU206482 lncRNA upstream 151636 6146825 ~ 6148812 (-) True G152414
XM_039824182.1 mRNA downstream 5030 5976548 ~ 5986907 (-) True il2rb
XM_039826252.1 mRNA downstream 24754 5959192 ~ 5967183 (-) True c1qtnf6a
XM_039825018.1 mRNA downstream 74981 5904938 ~ 5916956 (-) True ap5z1
XM_039825020.1 mRNA downstream 74982 5904938 ~ 5916955 (-) False ap5z1
XM_039825815.1 mRNA downstream 110271 5874742 ~ 5881666 (-) False wipi2
XM_039824184.1 mRNA upstream 663 5995852 ~ 6004000 (-) True LOC120574102
XM_039824186.1 mRNA upstream 663 5995852 ~ 6003996 (-) False LOC120574102
XM_039824187.1 mRNA upstream 11337 6006526 ~ 6008599 (-) True mpst
XM_039826320.1 mRNA upstream 49009 6044198 ~ 6053777 (-) True napsa
XM_039826322.1 mRNA upstream 78353 6073542 ~ 6081964 (-) False si:dkey-110g7.8
TU206279 other downstream 378269 5574680 ~ 5613668 (-) False atp5mf
TU206278 other downstream 378269 5610556 ~ 5613668 (-) False atp5mf
TU206260 other downstream 409076 5580368 ~ 5582861 (-) False bud31
TU206270 other downstream 437687 5549318 ~ 5554250 (-) False top3a
TU206084 other downstream 527519 5461846 ~ 5464418 (-) True G152114
TU206522 other upstream 187219 6182408 ~ 6228114 (-) True G152441
TU206683 other upstream 724595 6719784 ~ 6720643 (-) True G152567
XR_005641918.1 other upstream 2086949 8082138 ~ 8100398 (-) False LOC120574885
TU207167 other upstream 2445990 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 2736208 8731397 ~ 8733019 (-) True G153172

Expression Profile