RNA id: XM_039824184.1


Basic Information

Item Value
RNA id XM_039824184.1
length 3304
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC120574102
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5995852 ~ 6004000 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTGGGGTCCTTTCTTGCGATAGGCTAGCTGTCGAAACGGTGTTACGAGTCACATTGTTTTACACAACTGTGGTAAATtaacaaaaataacaccaatATATGTCGATTAGATTGTTTTGGGGATGTTGATAAAATCGAAGTTTCCTTTGGTTTGGTCATTTACGCCCTAACTGTCCCAGTAGTGTTGTTTTATAACGTCGaagggtgtgtttttttttcggtCGCCGTCAACACAGCAGTAGCGTTAGCAAAGCAACCAAGCTAACGTTCTCAAAACCCACGTAACGTTAATTCTgatatttagctagctagccaaaCAAAATAAGAGGGAGGCGTTGATGAGCAGTAATGTCTGGCATCGCTCTTAGCAGACTGTCCCAGGAGCGCAAAGCCTGGAGGAAAGACCATCCGTTTGGTTTTGTTGCTGTGCCCACGAAGAATCCTGATGGGACCATGAATCTGATGAACTGGGAGTGTGCCATTCCTGGGAAGAAAGGAACCTTGTGGGAGGGAGGACTCTACAAACTCAGAATGCTGTTCAAAGATGACTACCCTTCTTCACCACCCAAATGCAAGTTTGAGCCACCAATATTCCACCCGAATGTCTACCCATCTGGCACAGTGTGTCTGTCCATCCTGGAGGAGGACAAAGACTGGAGGCCTGCCATCACCATCAAACAGATCCTGTTGGGTATCCAGGAGCTGCTGAATGAGCCCAACATTCAAGACCCAGCACAAGCAGAGGCGTACACAATTTACTGTCAGAACAGGATGGACTATGAGAAGCGGGTAAGGGCACAGGCCAAGAAGTTTGCCCCCACATAGAGAGGAGAGCTGGGCTCTTTCCCGCCTGAGCAGCCTGGACGGACTGCTGGAGGTTACAAACAGGAGGCAGGCAGCACCTGATGGACCACTCCAATAAGAATCCAGTTTAGAGTATTATACTATTACGCAGGTGacgagaattttttttttttcttcttttttgaaaaCAACAAAACGTTCAATAAGAAATATTTATGCATTTTGAATGCATAGCTGGTGATCCTAGAACTCTGCTGTCAACACAACCTTTGCTATTTGTAACTCTTGTATAATTCATATCTCCGGTCTTGTCATGAGTGCTGCTCAGCTCACTCCTGCCTCCCATTGATTCTGTAAGTCCTAATAATTTATCGACAGAGCTGTAGAGACCACTGTGTGTGTAGTTCAGTCGGTTGTGGCAGAGGAGGAGATTTTGTTTATTCTTCTTTATTCTTacttccagtttttttttatttttattttatcaaacCCCAGAAGTATTGTAGATAGTGTTTCACGACCGTGAACAGGGACAAAGCAGTCAGACACACAAGGGAAGTCAGTCCTCCCGTTGTCAGGGTTGGGAGTCGAAATCTGGTTCAAAATTAGAACCCAATACAAGATGCCAagaaccgtgtgtgtgtgtgtgtgtgggggtgtggaggagaaaaaaaaaaaagtctggttCTGCTTATCTGTTCCTAAACAACTACCCATTGGCAAAGCGTTACACTTTGTGTTGTTTAGACAGTATTGGGAAGAGTTGCAAGCATGCGAGTCAGCTGTGCGCCATGGGCCGCTTTTTCTACTTTGCTGTCGTCGCagcccacctctctctctctctctctttctctctctctccccccccctcacacactaaacacacactacatacatcATCACCATTCTCAACCcagttgtatgttttttttccccccaaagaCGCAGTGAATGTTATTTTGCATTTCGACtcgtatgttgtttttattgaccGCCACCTCGTGTGTGAAGTAAACGTGGctgcctgtgtctgtctctgtgcagCATTCTGAGCAGACACGGGCAGAGGGGAGCGCAAAGTCTCGGCGAGAAAAAGCAGGTGTAGTAATGATATGAATAAATATGAATTGtgtaaaagtttttaaaaaaagtacaCCCCGCCCATCAAATAATCGGTAATCAAGAATCGTTAAGAACCTGAATCGATGAGCAGAATCGGCATCAGAATAGTTGAAATCCAAACAAAACCCAACCTTGCTCGTTGACCCAACCTTGTTTTTGTTCCCGTCACATACGCCTCACATTTGAGTTCCCAGAAAGGCATCAAAAGAATACTGTCAAGTCGCCAACTTCAGGTAAAAGACAATCCTGGCACTTTTTATATTGGTTGTTAGCGAAACCACCTCAGAGAAGGGAAGACATGCGAGAGATGAATGGGGCCCGTGAGCCAGGGCTTTGctttaaaataatcttttatttcagcGGAGCTAAGATAAGCTTACAGTGTGTTCACACCCAGGCGAAGCGATGTTTCACATTACTTTAATCGCGTGAGTTTGATCGCAGAATCACACTGGGATCATTTGTTTACTCACTTTACCCGCGTTGCTCGTGCCGGTGTAGAGCTTACCAGGTAGTCCAACTTCCTTGCTTACTTTCCCTTCTCTTTTGTCCGTTCTCTGTACAAATAATGAGGTACTATAGAGCTCTGCCAGCAGACAGCTACAGTTTGTCCCTTCATTTCTGATTCCACAATGTCAAGACATCAGGAGGATCTAAACACTGATTGGCTTTCGCGACACAGCACCATGCGGATTTCTCGCTGCAGGTTTGCGTCTTTGCATTGACTTTGCATGTAATGGTGTCGCCGAATTCGGGTGAAAATGCCTGGGTGGGAACACGCCATGAGTGTTCAGATTCTTTTTGTGAATCCAACTGGGGGAAAAGCTATTTGTCAATTACAGTTTCAGTGTTGAACTACATGCACATTCAACACCAGTTTGTCATTTGCTTCCCAAAGCGCTACAATATGAGATAGAGGAGAAGTTGCGTTGTAAGATAGAGAAGTTGCATTGTGACAAAAACGtttgctgtgtgtttttgttttgacgCTCAATCAGTTAGACATAGCCTAGCATACCATCACTTGTGGTTATTTTCTCCCACAATGCTCACAAAATGAATACAAACCTGTATAAATCATGAAGCTATTAAATGTTCAAGTCGATCTGGCAAACAGAAGCTGAAGGATCCTCATTGGAATGGCCTCTCAACCAGCAAGGACGACATGTGAAAGTGCACTTGAGAGTAATCGCAGGCCTGAGATTTTTTTTGCCTCTAAATATACGAGTGCATgtacataatataaataatgacaAATTGTGGAAgttatgttttatattgttttagcCAGTTGACATTTGTGTGTGGTATTATAACAAAGAACACAATAAATGGCATAAAATTGTGaaataaagttgaataaaaggaatgttttggg

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019789 SUMO transferase activity molecular_function

KEGG:

id description
K10577 UBE2I, UBC9; ubiquitin-conjugating enzyme E2 I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206416 lncRNA downstream 928 5991945 ~ 5994924 (-) False LOC120574101
TU206379 lncRNA downstream 46357 5949277 ~ 5949495 (-) True G152330
TU206378 lncRNA downstream 46833 5948814 ~ 5949019 (-) True G152329
TU206347 lncRNA downstream 121544 5873777 ~ 5874308 (-) True G152302
TU206342 lncRNA downstream 203677 5791967 ~ 5792175 (-) True G152298
TU206417 lncRNA upstream 5247 6009247 ~ 6010851 (-) True G152362
TU206467 lncRNA upstream 105739 6109739 ~ 6109942 (-) True G152400
TU206470 lncRNA upstream 107732 6111732 ~ 6111935 (-) True G152403
TU206473 lncRNA upstream 116448 6120448 ~ 6120667 (-) True G152406
TU206482 lncRNA upstream 142825 6146825 ~ 6148812 (-) True G152414
XM_039824183.1 mRNA downstream 663 5991937 ~ 5995189 (-) True LOC120574101
XM_039824182.1 mRNA downstream 8945 5976548 ~ 5986907 (-) True il2rb
XM_039826252.1 mRNA downstream 28669 5959192 ~ 5967183 (-) True c1qtnf6a
XM_039825018.1 mRNA downstream 78896 5904938 ~ 5916956 (-) True ap5z1
XM_039825020.1 mRNA downstream 78897 5904938 ~ 5916955 (-) False ap5z1
XM_039824187.1 mRNA upstream 2526 6006526 ~ 6008599 (-) True mpst
XM_039826320.1 mRNA upstream 40198 6044198 ~ 6053777 (-) True napsa
XM_039826322.1 mRNA upstream 69542 6073542 ~ 6081964 (-) False si:dkey-110g7.8
XM_039826321.1 mRNA upstream 69542 6073542 ~ 6081945 (-) True si:dkey-110g7.8
XM_039823671.1 mRNA upstream 151299 6155299 ~ 6169024 (-) True csf2rb
TU206279 other downstream 382184 5574680 ~ 5613668 (-) False atp5mf
TU206278 other downstream 382184 5610556 ~ 5613668 (-) False atp5mf
TU206260 other downstream 412991 5580368 ~ 5582861 (-) False bud31
TU206270 other downstream 441602 5549318 ~ 5554250 (-) False top3a
TU206084 other downstream 531434 5461846 ~ 5464418 (-) True G152114
TU206522 other upstream 178408 6182408 ~ 6228114 (-) True G152441
TU206683 other upstream 715784 6719784 ~ 6720643 (-) True G152567
XR_005641918.1 other upstream 2078138 8082138 ~ 8100398 (-) False LOC120574885
TU207167 other upstream 2437179 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 2727397 8731397 ~ 8733019 (-) True G153172

Expression Profile