RNA id: unassigned_transcript_747


Basic Information

Item Value
RNA id unassigned_transcript_747
length 498
RNA type V_gene_segment
GC content 0.49
exon number 5
gene id LOC120574352
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9244442 ~ 9337866 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgatggactataggacaggactgctgcttttaactctctgctgggcaggtgttgatggtcagactctgacagaatctgaaccagcgattaaaagacctggagaatcccacagattgacctgtacaacatctggattCACACTTAGTAGCTACTGGATGCACtggatcagacaggctcctggaaaaggactggagtggattgcTGCTGATACTAGTAGTAGTAGCAACTACTACTCTCAGTCAtcagtccaaggccggtttaccatctccagagacaacagcagagagcagctgtatctgcagatgaacagtctgaagactgaagattctgctgtttattattgtCCTCTGCAGGTGCAGACTGAGTCAAGTTCCCACCATGACAGTTGTACAGAGTGTCCTCCTCTTGGCTCTCATTTCAGCTGGTCAGGGCCAGTCCCTCACCTCCTCAGAGCCAGTGGTGAGCAGAGCTGGACAACCAGTCACTCTGTCCTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207900 lncRNA downstream 20122 9217069 ~ 9224320 (-) False LOC120574662
TU207902 lncRNA downstream 24539 9219599 ~ 9219903 (-) True G153462
TU207886 lncRNA downstream 40436 9187250 ~ 9204006 (-) False LOC120574599
TU207892 lncRNA downstream 40583 9196758 ~ 9203859 (-) True G153455
TU207884 lncRNA downstream 50267 9187250 ~ 9194175 (-) False LOC120574599
TU207951 lncRNA upstream 1701 9248397 ~ 9303347 (-) True G153508
TU207940 lncRNA upstream 3133 9249829 ~ 9273114 (-) False LOC120574652
TU207952 lncRNA upstream 11514 9258210 ~ 9265367 (-) True G153509
TU207938 lncRNA upstream 41607 9288303 ~ 9715061 (-) True G153498
TU207976 lncRNA upstream 112832 9359528 ~ 9359850 (-) True G153527
XM_039825003.1 mRNA downstream 196319 9043413 ~ 9048123 (-) True cabp5b
XM_039825617.1 mRNA downstream 207614 9020086 ~ 9036828 (-) False sez6l2
XM_039825615.1 mRNA downstream 207857 9020086 ~ 9036585 (-) True sez6l2
XM_039825761.1 mRNA downstream 225702 9011223 ~ 9018740 (-) True kctd13
XM_039825590.1 mRNA downstream 233511 9003265 ~ 9010931 (-) True hirip3
XM_039824654.1 mRNA upstream 97005 9343701 ~ 9345172 (-) True LOC120574364
XM_039824655.1 mRNA upstream 144869 9391565 ~ 9406804 (-) True LOC120574368
XM_039825001.1 mRNA upstream 450947 9697643 ~ 9739305 (-) True LOC120574579
XM_039824129.1 mRNA upstream 814590 10061286 ~ 10149481 (-) False cacna1aa
XM_039824126.1 mRNA upstream 814590 10061286 ~ 10149481 (-) False cacna1aa
unassigned_transcript_746 other downstream 663 9243148 ~ 9243779 (-) True LOC120574351
unassigned_transcript_745 other downstream 3100 9240830 ~ 9241342 (-) True LOC120574593
unassigned_transcript_744 other downstream 4424 9239409 ~ 9240018 (-) True LOC120574657
unassigned_transcript_743 other downstream 16727 9227266 ~ 9227715 (-) True LOC120574350
unassigned_transcript_742 other downstream 19987 9224025 ~ 9224455 (-) True LOC120574662
unassigned_transcript_748 other upstream 3143 9249839 ~ 9250269 (-) True LOC120574652
unassigned_transcript_749 other upstream 5538 9252234 ~ 9252773 (-) True LOC120574355
unassigned_transcript_750 other upstream 9589 9256285 ~ 9256782 (-) False LOC120574356
TU207944 other upstream 9626 9256322 ~ 9256868 (-) True LOC120574356
unassigned_transcript_751 other upstream 19592 9266288 ~ 9303638 (-) True LOC120574359

Expression Profile