RNA id: TU207944



Basic Information


Item Value
RNA id TU207944
length 439
RNA type TUCP
GC content 0.46
exon number 2
gene id LOC120574356
representative True

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9256285 ~ 9256868 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gtcaatgcaaaactcagatatcttcacctctacttatctgagtgcagagaggaggacagagaacagtggacacacagtttaacatgatggactataggacaggactgctgctgtTAACTatctgctgggcagGTGTTTGCAGTCAGACTCTGACTGAGTCTGAACCAGTGGTAAAGCGCCCTGGAGAATCCCACAAACTGACCTGTACATATGCAGGAATAGCAGATAGCAATGCTGATATCAGCTGGATCAGACAAGCTGAaggaaaaggactggagtgggttGCCTTTATTTCTGCTCCAAGTGGAAGCCCTAAAACTTATTCAACGTCAGTCCAGAATCGCTTCACCATATCCAGAGACAACAACGTGGACCAggtgtatctgcagatgaacagcctGACGACTGAAGactctgctgtttattattgtgctcgaga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU207900 lncRNA downstream 32002 9217069 ~ 9224320 (-) False LOC120574662
TU207902 lncRNA downstream 36419 9219599 ~ 9219903 (-) True G153462
TU207886 lncRNA downstream 52316 9187250 ~ 9204006 (-) False LOC120574599
TU207892 lncRNA downstream 52463 9196758 ~ 9203859 (-) True G153455
TU207884 lncRNA downstream 62147 9187250 ~ 9194175 (-) False LOC120574599
TU207952 lncRNA upstream 1342 9258210 ~ 9265367 (-) True G153509
TU207938 lncRNA upstream 31435 9288303 ~ 9715061 (-) True G153498
TU207976 lncRNA upstream 102660 9359528 ~ 9359850 (-) True G153527
TU207998 lncRNA upstream 285250 9542118 ~ 9548305 (-) True G153539
TU207921 lncRNA upstream 345989 9602857 ~ 9603106 (-) True G153481
XM_039825003.1 mRNA downstream 208199 9043413 ~ 9048123 (-) True cabp5b
XM_039825617.1 mRNA downstream 219494 9020086 ~ 9036828 (-) False sez6l2
XM_039825615.1 mRNA downstream 219737 9020086 ~ 9036585 (-) True sez6l2
XM_039825761.1 mRNA downstream 237582 9011223 ~ 9018740 (-) True kctd13
XM_039825590.1 mRNA downstream 245391 9003265 ~ 9010931 (-) True hirip3
XM_039824654.1 mRNA upstream 86833 9343701 ~ 9345172 (-) True LOC120574364
XM_039824655.1 mRNA upstream 134697 9391565 ~ 9406804 (-) True LOC120574368
XM_039825001.1 mRNA upstream 440775 9697643 ~ 9739305 (-) True LOC120574579
XM_039824129.1 mRNA upstream 804418 10061286 ~ 10149481 (-) False cacna1aa
XM_039824126.1 mRNA upstream 804418 10061286 ~ 10149481 (-) False cacna1aa
unassigned_transcript_749 other downstream 3549 9252234 ~ 9252773 (-) True LOC120574355
unassigned_transcript_748 other downstream 6053 9249839 ~ 9250269 (-) True LOC120574652
unassigned_transcript_747 other downstream 9626 9244442 ~ 9246696 (-) True LOC120574352
unassigned_transcript_746 other downstream 12543 9243148 ~ 9243779 (-) True LOC120574351
unassigned_transcript_745 other downstream 14980 9240830 ~ 9241342 (-) True LOC120574593
unassigned_transcript_751 other upstream 9420 9266288 ~ 9303638 (-) True LOC120574359
TU207955 other upstream 13865 9270733 ~ 9271104 (-) False LOC120574359
unassigned_transcript_752 other upstream 19600 9276468 ~ 9276996 (-) True LOC120574591
TU207957 other upstream 19612 9276480 ~ 9277002 (-) False LOC120574591
TU207926 other upstream 21509 9278377 ~ 9278925 (-) True G153486

Expression Profile