RNA id: TU219033


Basic Information

Item Value
RNA id TU219033
length 230
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G161837
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 38741307 ~ 38741536 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acaccttcgaggcataaatggccccattgacttccattataaccacatgttttgatctcactgcctttacagtataaaaccatgcattctgtaatgtcagcatttcatttggaagaaaagtagtcatatttgacatttttacagtatttcaccagattcaaccattttgcccttgtaggccgatgcatgaaattatagttatattatggagctctgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218970 lncRNA upstream 200927 38534395 ~ 38540380 (+) True LOC120575413
XR_005641987.1 lncRNA upstream 200933 38534418 ~ 38540374 (+) False LOC120575413
XR_005641986.1 lncRNA upstream 256160 38480278 ~ 38485147 (+) True LOC120575412
XR_005641985.1 lncRNA upstream 256160 38481349 ~ 38485147 (+) False LOC120575412
TU218877 lncRNA upstream 300058 38435931 ~ 38441249 (+) True G161709
TU219035 lncRNA downstream 9260 38750796 ~ 38751798 (+) True G161839
TU219037 lncRNA downstream 24566 38766102 ~ 38766373 (+) True G161841
TU219038 lncRNA downstream 26217 38767753 ~ 38767991 (+) True G161842
XR_005641792.1 lncRNA downstream 41081 38782617 ~ 38784003 (+) True LOC120573912
XM_039823826.1 mRNA upstream 6627 38731566 ~ 38734680 (+) True LOC120573911
XM_039826059.1 mRNA upstream 14853 38723832 ~ 38726454 (+) True LOC120575342
XM_039826057.1 mRNA upstream 188824 38540484 ~ 38552483 (+) True LOC120575340
XM_039826178.1 mRNA upstream 360983 38373253 ~ 38380324 (+) False LOC120575391
XM_039826174.1 mRNA upstream 360983 38373583 ~ 38380324 (+) True LOC120575391
TU218883 other upstream 269982 38470714 ~ 38471325 (+) True G161714
XR_005641977.1 other upstream 785027 37934062 ~ 37956280 (+) False LOC120575390
TU218278 other upstream 1622056 37115823 ~ 37119251 (+) False utp18
TU218032 other upstream 2266587 36469645 ~ 36474720 (+) False LOC120574801
TU217802 other upstream 2615755 36089620 ~ 36125552 (+) True G160851
TU218981 other downstream 29171 38770707 ~ 38772216 (+) True G161792
TU218982 other downstream 41527 38783063 ~ 38784044 (+) False LOC120573912

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062089 False 10121 lncRNA 0.34 3 NC_007116.7 48104453 ~ 48179264 (-)