RNA id: TU218877


Basic Information

Item Value
RNA id TU218877
length 215
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G161709
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 38435931 ~ 38441249 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCTCCCGGCACATGGGTGACGTTCTCCAGAGAACCAACTTTAGATTGAACGGTTTTAAAATCCACCTTCTCTGATTTAATCTCCACCTTCCCTCCAcctggtttgtgtttaatgttgtcTTTGGAGCCACACTTTGATGCCACGCTGGTCAGATTCATCTTCTTATTAACAATCTGAAccttgcCCCCTccaggtgtgtgtttgaggtTCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218825 lncRNA upstream 6052 38427019 ~ 38429879 (+) True G161669
XR_005641982.1 lncRNA upstream 36246 38399343 ~ 38399685 (+) True LOC120575407
TU218839 lncRNA upstream 84259 38299204 ~ 38351672 (+) True G161682
TU218823 lncRNA upstream 171598 38258117 ~ 38264333 (+) True LOC120575403
XR_005641978.1 lncRNA upstream 173887 38258151 ~ 38262044 (+) False LOC120575403
XR_005641986.1 lncRNA downstream 39029 38480278 ~ 38485147 (+) True LOC120575412
XR_005641985.1 lncRNA downstream 40100 38481349 ~ 38485147 (+) False LOC120575412
TU218970 lncRNA downstream 93146 38534395 ~ 38540380 (+) True LOC120575413
XR_005641987.1 lncRNA downstream 93169 38534418 ~ 38540374 (+) False LOC120575413
TU219033 lncRNA downstream 300058 38741307 ~ 38741536 (+) True G161837
XM_039826178.1 mRNA upstream 55607 38373253 ~ 38380324 (+) False LOC120575391
XM_039826174.1 mRNA upstream 55607 38373583 ~ 38380324 (+) True LOC120575391
XM_039826177.1 mRNA upstream 55607 38375571 ~ 38380324 (+) False LOC120575391
XM_039826175.1 mRNA upstream 55607 38375692 ~ 38380324 (+) False LOC120575391
XM_039826183.1 mRNA upstream 63135 38345203 ~ 38372796 (+) False LOC120575393
XM_039826057.1 mRNA downstream 99235 38540484 ~ 38552483 (+) True LOC120575340
XM_039826059.1 mRNA downstream 282583 38723832 ~ 38726454 (+) True LOC120575342
XM_039823826.1 mRNA downstream 290317 38731566 ~ 38734680 (+) True LOC120573911
XR_005641977.1 other upstream 479651 37934062 ~ 37956280 (+) False LOC120575390
TU218278 other upstream 1316680 37115823 ~ 37119251 (+) False utp18
TU218032 other upstream 1961211 36469645 ~ 36474720 (+) False LOC120574801
TU217802 other upstream 2310379 36089620 ~ 36125552 (+) True G160851
TU217642 other upstream 2786947 35626515 ~ 35648984 (+) False LOC120575321
TU218883 other downstream 29465 38470714 ~ 38471325 (+) True G161714
TU218981 other downstream 329458 38770707 ~ 38772216 (+) True G161792
TU218982 other downstream 341814 38783063 ~ 38784044 (+) False LOC120573912

Expression Profile