RNA id: XR_005641978.1


Basic Information

Item Value
RNA id XR_005641978.1
length 703
lncRNA type inter_gene
GC content 0.51
exon number 3
gene id LOC120575403
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 38258117 ~ 38264333 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TcacctgtgtttctgtgtgtcaggTGGAGGGAAGGTGGAGATTAAATCAGAGAAGGTGGATTTTAAAACCGTTCAATCTAAAGTTGGTTCTCTGGAGAACGTCACCCATGTGCCGGGAGGAGGGAAAAAGAAGATTGAGAGTCAGAAACTGAGCTTCAGAGAGAGCGCCAAAGCTCGGACGGACCACGGGGCTGACATCATCGTCCAGCCTGACTCCGCCCCCTCCAGCGACACCTTCTCCCCAGGAAGCCTAAACGCAGCTGAAGCCACACCCCTCGACACGTTGGCCGACCAGGTGTCCGCCTCCCTCGCCAAACAAGGCCTGTGATTGGACAGCCCCGAGCCTGCAGAGCCCCCCCTCCCATTACCAAGGAAACTACCTgatggaagaaagaaaaaagataattttgtctttttcctcaTGACCTTCATCTGACATCACACGCACGATTGGAGAGATTTTATTAAGTTAcagtcagccaatcacagcgcagcGCGTctacagccaatcacagcgcagcGCGTCCACAGCCAATAACAGTGCAGCGTGTctacagccaatcacagcgcagcGTGTctacagccaatcacagcgcagtCAGGTGGGAGGAACCAGGTCTGTGTAGTTGAAACTAAACGTTACAAACCGTTCATTTAAACTGGAACAGAGATGTGTTGAACACCCTTTCGTGTCTTTTTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218621 lncRNA upstream 4111 38252956 ~ 38254040 (+) True G161512
TU218714 lncRNA upstream 15324 38240355 ~ 38242827 (+) True G161590
TU218713 lncRNA upstream 33744 38224106 ~ 38224407 (+) True G161589
TU218679 lncRNA upstream 183584 38069494 ~ 38074567 (+) True G161558
TU218667 lncRNA upstream 213126 38041766 ~ 38045025 (+) True G161546
TU218839 lncRNA downstream 37160 38299204 ~ 38351672 (+) True G161682
TU218861 lncRNA downstream 124755 38386799 ~ 38437964 (+) True G161699
XR_005641982.1 lncRNA downstream 137299 38399343 ~ 38399685 (+) True LOC120575407
TU218825 lncRNA downstream 164975 38427019 ~ 38429879 (+) True G161669
TU218877 lncRNA downstream 173887 38435931 ~ 38441249 (+) True G161709
XM_039826180.1 mRNA upstream 55719 38159992 ~ 38202432 (+) False samd14
XM_039826179.1 mRNA upstream 55719 38159994 ~ 38202432 (+) True samd14
XM_039826188.1 mRNA upstream 169630 38080093 ~ 38088521 (+) True LOC120575397
XM_039826193.1 mRNA upstream 233035 38021774 ~ 38025116 (+) True LOC120575400
XM_039826192.1 mRNA upstream 273652 37978980 ~ 37984499 (+) True LOC120575399
XM_039826186.1 mRNA downstream 4702 38266746 ~ 38268039 (+) True LOC120575395
XM_039826190.1 mRNA downstream 9306 38271350 ~ 38287654 (+) False LOC120575398
XM_039826189.1 mRNA downstream 9308 38271352 ~ 38287654 (+) True LOC120575398
XM_039826182.1 mRNA downstream 83065 38345109 ~ 38372796 (+) False LOC120575393
XM_039826181.1 mRNA downstream 83159 38345203 ~ 38372796 (+) True LOC120575393
XR_005641977.1 other upstream 301871 37934062 ~ 37956280 (+) False LOC120575390
TU218278 other upstream 1138900 37115823 ~ 37119251 (+) False utp18
TU218032 other upstream 1783431 36469645 ~ 36474720 (+) False LOC120574801
TU217802 other upstream 2132599 36089620 ~ 36125552 (+) True G160851
TU217642 other upstream 2609167 35626515 ~ 35648984 (+) False LOC120575321
TU218883 other downstream 208670 38470714 ~ 38471325 (+) True G161714
TU218981 other downstream 508663 38770707 ~ 38772216 (+) True G161792
TU218982 other downstream 521019 38783063 ~ 38784044 (+) False LOC120573912