RNA id: XM_039826192.1


Basic Information

Item Value
RNA id XM_039826192.1
length 703
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC120575399
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 37978980 ~ 37984499 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgagagtgagtgtgtgtgtgtgtgtgtggaaagggAGAGTGAAAACCCATTCTAAAATTCCCGACTGTTTTCTCTTTGCTGTTTAAATAGTGAAGGAATCAGAATGTTGGAGAACAAAGTCTCTCAGTCTTCAGCCTTACTAACCATCCTCATCATCACCTTCTTCTTCATGATGCAGAATCTGAGCGGCGTGCTGATCTTCCTCCTCGCCACCCTGACCCCGGTcctgtgctgtgattggctcagaCACTACGGTCACCTTAGCAACAAATCAATGACTCTGCTGCGCCTCATGGGTGCTGAGCTCTCTGACCACGACAGccctctttcctttccttaCAAGTTCTACAGACGCATACAAAACAACACGgtGGAGTCCCAGCTGGTTTTCATCAGAGACAGTCTGGAGCTGATTGAAGGTCTCTATCTCCATAACGACCTCTCCTCCGTTGCCTGGGATACAGACAGGACGGACCACTTCCTGATGACgctggagagacagagagaagggatCAGCAGCTGTCTTTCAACGGAGAGGAGAGCAGACAGCCGACTGAGGAAATACTACCGGAGACTGGAGACTCTGCTCCACACGGGAGGCAGCAGTGCATCCTGGGAGATGATCCGGAAGGTGACTGACCAGCACCTGCACCAGCTGAACCTGCTGGTGAACTTCATGGTGGAACAGCAGAAGCATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218643 lncRNA upstream 16505 37957943 ~ 37962475 (+) True G161523
TU218639 lncRNA upstream 42261 37936273 ~ 37936719 (+) True G161520
TU218613 lncRNA upstream 176539 37802229 ~ 37802441 (+) True G161505
TU218583 lncRNA upstream 273039 37705619 ~ 37705941 (+) True G161476
TU218514 lncRNA upstream 291829 37635907 ~ 37687151 (+) True G161442
TU218655 lncRNA downstream 10348 37994847 ~ 38009171 (+) True G161535
TU218667 lncRNA downstream 57267 38041766 ~ 38045025 (+) True G161546
TU218679 lncRNA downstream 84995 38069494 ~ 38074567 (+) True G161558
TU218713 lncRNA downstream 239607 38224106 ~ 38224407 (+) True G161589
TU218714 lncRNA downstream 255856 38240355 ~ 38242827 (+) True G161590
XM_039826171.1 mRNA upstream 22544 37934062 ~ 37956436 (+) True LOC120575390
XM_039826172.1 mRNA upstream 35981 37934062 ~ 37942999 (+) False LOC120575390
XM_039826173.1 mRNA upstream 35981 37934062 ~ 37942999 (+) False LOC120575390
XM_039826155.1 mRNA upstream 49337 37886274 ~ 37929643 (+) False LOC120575386
XM_039826156.1 mRNA upstream 49689 37885496 ~ 37929291 (+) True LOC120575386
XM_039826193.1 mRNA downstream 37275 38021774 ~ 38025116 (+) True LOC120575400
XM_039826188.1 mRNA downstream 95594 38080093 ~ 38088521 (+) True LOC120575397
XM_039826180.1 mRNA downstream 175493 38159992 ~ 38202432 (+) False samd14
XM_039826179.1 mRNA downstream 175495 38159994 ~ 38202432 (+) True samd14
XM_039826186.1 mRNA downstream 282247 38266746 ~ 38268039 (+) True LOC120575395
XR_005641977.1 other upstream 22700 37934062 ~ 37956280 (+) False LOC120575390
TU218278 other upstream 859729 37115823 ~ 37119251 (+) False utp18
TU218032 other upstream 1504260 36469645 ~ 36474720 (+) False LOC120574801
TU217802 other upstream 1853428 36089620 ~ 36125552 (+) True G160851
TU217642 other upstream 2329996 35626515 ~ 35648984 (+) False LOC120575321
TU218883 other downstream 486215 38470714 ~ 38471325 (+) True G161714
TU218981 other downstream 786208 38770707 ~ 38772216 (+) True G161792
TU218982 other downstream 798564 38783063 ~ 38784044 (+) False LOC120573912

Expression Profile