G161546


Basic Information

Item Value
gene id G161546
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 38041766 ~ 38045025 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU218667
CTTTCTCAAGGTATTGTGGGGGCTCGTCCGTGTCGTAGTCTGCCggtggagggaggggaggcaTGAGGTCATCAAACCCTCCGAGATCGTCTAATAGGAGAGGAGGGGGCATGGCTGGGAGCTCCAGATCTAAGAAACACAGATCCTGTGAGtgacagctgtgattggccGGTCAGTTTAAGGAGGCGGGGCTTAGGCAGAAAGCAGCAGAGCTGATAGTTTACATGCTCAGAAGCTgagctgtttgtctgtctgtctctgtctgtctgtgtctgtgtgtgcgtgcatgtgtctgtgtgtttgtgtgtctgtgtttgtgtgtgtatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgtgcatgcgtgtgtctgtgtgtttgtgtgtctgtgtgtttgtctgtctgtctgtgtgtgtgtgtgtgttttgtgtgtgtgtgtgtgtgtgtgtgtactctgatGTGTAGTACTGCTGGAATaggacaacttttttttttttgttattgccaATTGTTCCAGAACCCTgactttgagaaccactgatctaTAGTCAGTTGtatttaacatcagcaacagattgCCTGCAGAGCTGCTTTGTCAGAATCTaaacaagctgatatatggtcTGATAACACTTTTAATAAATCACAtctaacaggatgtgagtgtttctgtgacttcctgttcagactGAAGGAAACTTTTCTCTCAGCCCCCCCTCCCTTGCTACTACCAGTCATAGAAAATTAACTACACACCAACAGCAGTTAGTGTTTCTTAACCAGGTGTAACAGTAGTTAGAGTTTCTTACCCAGGTGTAACAGTAGTTAGTGTTTCTTACCCAGGTGTAACAGCAGTTAGAGTTTCTTACCCAGGTGTAACAGTAGTTAGAGTTTCTTACCCAGGTGTAACAGTAGGTAGTGTTTCTTACCCAGGTGTAACAGTAGTTAGAGTTTCTTACCCAGGTGTAACAGTAGTTAGAGTTTCTTACCCAGGTGTAACAGTAGTCAGAGTTTCTTACCCAGGTGTAACAGTAGTTAGAGTTTCTTACCCAGGTGTAAAAGCAATTACAGTTTCTTACCCAGGTGTAACAGTAGGTAGTGTTTCTTACCCAGGTGTTGAAGGCGAGCAGGTAAGCAGAGTCGAtgtgaggaagaagaggagcgCGGGAGcaaagggaaggagggaggaggagcgTTGGGGGGAGGgtaggggggaggaggggggatcatcactgacagacagacaggttagagagacagacagacagcacacagacagacaggcaggcagacagacagagagacagacagatagacaggcagacagagagacagagagacagagagacagagagacagagacagacagcacacagacagagagacaagtcAGTATCacctgtgtttgtgttcataGATAATGTGTAGAGACACAGAGCTCCAGACTGAAACATCATCTGATAAGATAAAGGTCTGCAACCTTCCTGGAATCGTCTCCAGGACTTTTAAAAGTTCCTTAATGACTCCTGAATGTCCTAACGGCCcctataacccccccccccccgaggaCTTCAGGAACCTCCTCAAGGCTCTTTAGAACCTAAGACTCACTGCAACCTCTTGATGTACCCTTAGAACCCACTAACCCCTGAAAGTCTTGGATCCTCTGACCTCCTCGGGGACTCCTGCAGCATCCCCAAGGCCCTaatacagttctcaaggaccaACTACCTCCTCCTGAGACCTTCTTAAGCCCAGTCCAGCAGTCCGACTTTAAGGATAACTAGAATTCCTAAATCCTGAAACTTACTGAAGGACCTCATAGAGTTCTCACAGACCCCTTAACTTCCTAAAACAACCCCCCCAAGGGCAAGGGCAGGTTTCTTTATTTGTCTACCTTGGGAGACCTTTGTGTTGGAACTCCTGAGACTTTCGTGAAGACGATTACAATTCCTTGATCTTGAAACTTACTCAAGGCCCGCGGTCTTTCCCAAATCAGTCCTGGAAACCTCTTAAAGGCCCCCTGAATTTTCTTTAAGCATCCCTAGAAATGACTCTTGGCACCTCCCTTTAAAAGTGCTGACACATCTCATAGCCTAAAGCTCAAAGCACTTTCTCTAGGACACCTATGACTTAATTCATGACCCAGCATCTCCTTTAACACTCCTCAAGCACTCATTCTACCACAAACATCCTCAAGGACTTCTTGAATCGACTCAAAGCCCCTTAGAAGAAACTCAAGAACATCATAACTTCCTGAAGATAGGGTAGAACATTCCCAAAGACCCACTATCCCCCTCAAGGACTCTTAGTACTCCAAACATCCTCAAGAATTCCTACAACTTCCTCTAAGACAAAAAATAACCTAGACTATGGTGCACATACTTGGTGGGGGGATTAGGATTCCTCCctcaagataaataaataaataaataaaatgttacattGCAACACACAATGCAATTTGACATCATTTTGGATCGTTATTATCTCCATATCTATGTctgaaacgttggaaaagctagagcagataatacataaataacactcaaaaagcttaatgacaaaacttgctaaataaGTCCACTAGGGAACCGGCACCAAAGACTAATAATGACTGGGAAAACCTGCTCCTAACATCCTCAAGGATACTCCCCAAAGGACCCGTAGGTTCTCCTCAATGATTGATGTAACCTCCTCAAGGACTCTTAAAACATCTTGAAGAACTCCTAGTACCCCAAAcatccttaaaggggtgatagaatgcaaaaccgattttaccctgtcatagttgaataacgacagtacggtgggtaaataggacatacatagaagctcaaagtcccactgacttactatgaaaatctcatattttgaaactgccgctgaaaacgggcgaatctcaacaaagctgagttgcttacgcaagcgtctcaaaatccggaaccttaagagaacagtcacgccccaacatttacataggctacacaactgacctgagatcaggtagtcttctgaatctagctaggtcacgcagatc

Function

GO: NA

KEGG:

id description
ko04062 Chemokine signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU218667 True 3050 lncRNA 0.45 3 38041766 38045025

Neighbor

gene id symbol gene type direction distance location
LOC120575400 NA coding upstream 16650 38021774 ~ 38025116 (+)
LOC120575399 NA coding upstream 57267 37978980 ~ 37984499 (+)
LOC120575386 NA coding upstream 112123 37885496 ~ 37929643 (+)
psmd3 psmd3 coding upstream 181248 37835320 ~ 37860518 (+)
LOC120575334 NA coding upstream 261972 37770241 ~ 37779794 (+)
LOC120575397 NA coding downstream 35068 38080093 ~ 38088521 (+)
samd14 LOC106528058,LOC104957522 coding downstream 114967 38159992 ~ 38202432 (+)
LOC120575395 NA coding downstream 221721 38266746 ~ 38268039 (+)
LOC120575398 NA coding downstream 226325 38271350 ~ 38287654 (+)
LOC120575393 LOC103366924,LOC100704949,LOC102204201,LOC102307967 coding downstream 300084 38345109 ~ 38372796 (+)
G161535 NA non-coding upstream 32595 37994847 ~ 38009171 (+)
G161523 NA non-coding upstream 79291 37957943 ~ 37962475 (+)
G161520 NA non-coding upstream 105047 37936273 ~ 37936719 (+)
G161505 NA non-coding upstream 239325 37802229 ~ 37802441 (+)
G161476 NA non-coding upstream 335825 37705619 ~ 37705941 (+)
G161558 NA non-coding downstream 24469 38069494 ~ 38074567 (+)
G161589 NA non-coding downstream 179081 38224106 ~ 38224407 (+)
G161590 NA non-coding downstream 195330 38240355 ~ 38242827 (+)
G161512 NA non-coding downstream 207931 38252956 ~ 38254040 (+)
LOC120575403 LOC103370772,LOC101481951 non-coding downstream 213092 38258117 ~ 38264333 (+)
LOC120575390 NA other upstream 85330 37934062 ~ 37956436 (+)
utp18 utp18,LOC102793997,LOC101163956 other upstream 922512 37103373 ~ 37119254 (+)
LOC120574801 NA other upstream 1566294 36469606 ~ 36475472 (+)
G160851 LOC102784589,LOC104964221,LOC102077593,LOC101468505,LOC102290184,LOC102208295 other upstream 1916214 36089620 ~ 36125552 (+)
LOC120575321 keratin,LOC103393440,LOC106904882 other upstream 2392782 35626515 ~ 35648984 (+)
G161714 NA other downstream 425689 38470714 ~ 38471325 (+)
G161792 cdc27 other downstream 725682 38770707 ~ 38772216 (+)
LOC120573912 cdc27 other downstream 737592 38782617 ~ 38784044 (+)

Expression


Co-expression Network