psmd3 (psmd3)


Basic Information

Item Value
gene id psmd3
gene name psmd3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 37835320 ~ 37860518 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039826054.1
TGAAGTATCCCACAATCCTTTGCGGTTCAAAATAGTTGCCAGTCATTGTAGCAGCAGAGTGAGGTGACAACGCAGATTTTGTATAATAATCTCGATATCTCAGCGAGTTCAGGTTAGTATTTCTCTCTCCCGGACACCATGAAGGAGACAGCGGCCAAGCGGCGCGGGGACAAAGCGGCAGCTAAAGACTCTAAAGCGGAGAAGCAGAAAGCTCCGGAGCCGCAGGACGTGGAGATGACGCCGGAGGAAGACGCAGCTAACGCGGCTAAACAACCCAAAGAGCTGGACAGCCTCACCTTGGACGATATCAGAGAACATGTGAAGCAGATAGAGAAGGCGGTGTCGGGGAAGGAGCCTCGCTTCGTGCTGCGAGCCCTCCGAGCGCTGCCGTCCACCAGCCGCCGGCTCAACACTAACGTCCTGCACAAAGCCGTCAACGGATTcttcaccaacaacaccaacacCAGAGACTTCCTGCTCAGTTTCCTGGAGGAGcCGATGGAGATGGCAGAAGGAGACGTCCAGTTCCGTCCCAGGATGGGTAAATCAGCGGCTGCTCCTCTGCTGCCGGAGGTGGAGGCTTACCTacagctgctgctggtggtTCACCTGACCAACAACAAGAGATACACAGAGGCTCAGAAAGTGTCAGACGACCTGCTGCAGAAGATTGGCTCAAAGAACCGCAGAGCTCTGGATCTGGTGGCTGCCAAGTGTTACTATTACCACGCCAGAGTGTACGAGTTCCTCCACCAGTTTGACTCCATgcgcagTTTCCTCCACACCCGTCTGCGTACGGCGACTCTGCGCCATGATGCCGACGGCCAGGCCGTCCTGCTGAACCTGCTGCTGAGGAACTACCTCCACTTCAACCTGTACGACCAGGCCGAGAAGCTGGTGTCCAAGTCCGTGTTTCCTGAACTCGCCAACAACAACGAGTGGGCCCGCTACCTCTACTACACAggtcGTATTAAGGCGATCCAGTTGGAGTACTCGGAGGCTCGCAGGACTCTGACCAACGCTCTGAGGAAAGCTCCACAACACACCGCTGTGGGCTTCAAACAGACGGTCCACAAGCTGCTGATCGTGGTGGAGCTGCTGCTGGGAGAGATTCCTGACAGACTTCAGTTCAGACAGCCGTCTCTCAAGAGGTCCCTGATGCCCTACTTCCTGCTGACTCAGGCGGTGAGAACTGGTAACCTGGCAAAGTTTAACCAGGTGTTGGAGCAGTTTGGGGAGAAGTTTCAGACCGATGGGACGTACACACTTATCATCCGCCTGAGACACAACGTCATCAAGACTGgtgtgcgTATGATCAGCCTGTCGTACTCTCGTATCTCTCTGGCCGACATCGCCCAGAAGCTGCAGCTCGACAGCCCAGAGGATGCAGAGTTCATAGTCGCCAAGGCGATCCGTGACGGAGTGATCGAGGCGAGCATCAACCACGAGAAAGGCTTCGTCCAATCAAAAGAGACCATGGACATCTACGGCACCAGAGAGCCTCAGCTGGCCTTCCATCAGAGAATCTCCTTCTGCCTGGACATCCACAACATGTCTGTCAAgGCCATGAGGTTTCCTCCTAAAGCTTAACAAGGACCTGGAGTCAGcagaggtaacacacacacacacacacacacacacacacacacacagacacagacagacacacacagacagaGGCGTCGGGAGCGTGAGCAGCAGGATCTGGAGTTTCGCCAAAGAAATGGCCGAAGATGGCGACGACAGCTTCCCATGATCCTCTCTGCTGACTTCCTGCCCGCGCGCTGA

Function

symbol description
psmd3 Predicted to enable enzyme regulator activity. Acts upstream of or within brain development; larval locomotory behavior; and otic vesicle development. Predicted to be part of proteasome regulatory particle, lid subcomplex. Orthologous to human PSMD3 (proteasome 26S subunit, non-ATPase 3).

NR:

description
PREDICTED: 26S proteasome non-ATPase regulatory subunit 3

GO:

id name namespace
GO:0042176 regulation of protein catabolic process biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0000502 proteasome complex cellular_component
GO:0030234 enzyme regulator activity molecular_function

KEGG:

id description
K03033 PSMD3, RPN3; 26S proteasome regulatory subunit N3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039826054.1 True 1788 mRNA 0.55 13 37835320 37860518

Neighbor

gene id symbol gene type direction distance location
LOC120575334 NA coding upstream 55526 37770241 ~ 37779794 (+)
LOC120575332 socs7,LOC102301327,LOC101475758,LOC102205792 coding upstream 610431 37193977 ~ 37224889 (+)
kpnb1 kpnb1 coding upstream 641969 37177075 ~ 37193351 (+)
zgc:158376 LOC103361495,LOC101474986,LOC102781812,LOC102300501 coding upstream 667544 37146845 ~ 37167776 (+)
LOC120573828 NA coding upstream 697509 37120458 ~ 37137811 (+)
LOC120575386 NA coding downstream 24978 37885496 ~ 37929643 (+)
LOC120575399 NA coding downstream 118462 37978980 ~ 37984499 (+)
LOC120575400 NA coding downstream 161256 38021774 ~ 38025116 (+)
LOC120575397 NA coding downstream 219575 38080093 ~ 38088521 (+)
samd14 LOC106528058,LOC104957522 coding downstream 299474 38159992 ~ 38202432 (+)
G161505 NA non-coding upstream 32879 37802229 ~ 37802441 (+)
G161476 NA non-coding upstream 129379 37705619 ~ 37705941 (+)
G161442 NA non-coding upstream 148169 37635907 ~ 37687151 (+)
G161433 NA non-coding upstream 241336 37593626 ~ 37593984 (+)
G161423 NA non-coding upstream 273692 37559927 ~ 37561628 (+)
G161520 NA non-coding downstream 75755 37936273 ~ 37936719 (+)
G161523 NA non-coding downstream 97425 37957943 ~ 37962475 (+)
G161535 NA non-coding downstream 134329 37994847 ~ 38009171 (+)
G161546 NA non-coding downstream 181248 38041766 ~ 38045025 (+)
G161558 NA non-coding downstream 208976 38069494 ~ 38074567 (+)
utp18 utp18,LOC102793997,LOC101163956 other upstream 716066 37103373 ~ 37119254 (+)
LOC120574801 NA other upstream 1359848 36469606 ~ 36475472 (+)
G160851 LOC102784589,LOC104964221,LOC102077593,LOC101468505,LOC102290184,LOC102208295 other upstream 1709768 36089620 ~ 36125552 (+)
LOC120575321 keratin,LOC103393440,LOC106904882 other upstream 2186336 35626515 ~ 35648984 (+)
LOC120575316 NA other upstream 2779664 35045717 ~ 35055656 (+)
LOC120575390 NA other downstream 73544 37934062 ~ 37956436 (+)
G161714 NA other downstream 610196 38470714 ~ 38471325 (+)
G161792 cdc27 other downstream 910189 38770707 ~ 38772216 (+)
LOC120573912 cdc27 other downstream 922099 38782617 ~ 38784044 (+)

Expression


Co-expression Network