LOC120575332 (socs7,LOC102301327,LOC101475758,LOC102205792)


Basic Information

Item Value
gene id LOC120575332
gene name socs7,LOC102301327,LOC101475758,LOC102205792
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 37193977 ~ 37224889 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039826049.1
ctcCGGTAGTGACGGAGGAGGCTCTCCGGTACCGGGAAGTGTTGAGCACATAGCGAGAGGTTTCGGTTTCTCTCCGGTAATCAATCAGCTGATCGACTATTGATGTCTCCGTTGCGCAGCCGCCGCGCGCGCCCCCTGTCATCTCCACATCCGTGTTGTCTCACCGGAGGATGATGTGTCGGTAGGAGGCTAAAACGGCTAGCTCACGTAACGTTACCGGGCGGTTTCTCATGTCTTTTCACGTTCAGCGGAGCTGTTACCGTCACGAGCCGGTCCGGACCTTACATGGCGGTTGGTGGTCGGGGTCCCGTCCGGCTGCCCGGTGAGCTGAGCGGGGAGGATGCTGCAGGTAGCCGCCGTTAGCTCCGTTAGCTCCGTAGCTGTATTTACATCGGTGTTATGTAAGAGAGGAGCCCGTTAGCTCCCGTTAGCTTGCCTTTAGCtttcgttagctagctagccgttAGTAGCCGTTAGCTGTCAGGATGAATGACGCGCAGCAAGAAATGTCTCCGGACTTCGTCTTGATGCGTCTCGTGTCCGCGGCGGAGTACGACCGGCTGGACGAGCCCGACGACCTGATGTCCGGGGGCGGCGGGTTCGGGCCTGTTAAACCCGCGCTGGGTCACCGCGGTGGCCCCTCGCCGGGCCTCGGCTCGGCCTCCCCTCACTACAGCTCTCCGCTCCCCGGGAGGAGCGAGCTGTCCGCGGGGGCCCCGCTGACAGGCTCCGACGCGCCGCTGTCTCCGCCGCTGTCTCCGCCGGAGGACTTTGTGGACTTCCCAGTGCAGCACGGCTCGGGTATGCACGGTTCAACGGCCCAGCTGATGGTGTTCCAGAACCTGCTGCGGTCCGGAGACCGGATCctggaggaggcagagagacagagacagcagCTGGACTCTGGAGCCGGACCCAAGGACCAGAACTCTGTCGGCATCCCGTCAGCGGAGGAGCAGCTCCTCGGACTGTCAGACGGACCCCTGCCCCCCCAGCAGGACGTCCCGGCTCTGGACTGCGAGCCCGGCTCGGTGCTGTGCCAGCGGCACCGCCTGCTGACAGACCGCCTGGCGAAGTGGCCGCCGGGCCTGCTGGACCAGGCCCTGCGTCTGGGCCTGCTGGACAGGAAGAGCTACTCCAGCgggggggaggagccggttcTGGCTCTGGCCCGGCGGCTGGGCCAgctgggggaggggagggagggaggcaggggGGAGACGGCGCCCTCGCTGTCTCGCTGCTCCTGTCACAGCGTGCTTGGCTCGGGGACGCCCGGCGAGGACCCAGGTGAGACCAGCGACGCCCTGCTGGTGCTGGAGGGTCTGGGGTccgaggaggaggggggaacgCCATGTGGGGGGGCAGGGCCAGCGTTCTCCAGCGGGACGCTGAGCGGTCTGATGCTGCAGGTCCACAGACTGGCCGAGGAGGCCGGCGTCTGCACCGATCAGGGCTGCCGGTCCTCTCTGGCGGTCCTCGGAGCCACCGTGTCCCCCCCACCCTGCGCAGACCCCCGCCCCCCCTCCACACCCGGCCCGCACCTGCCGGCCCTGTCCGCCGCCCTCCAGGCCTCCTCCAGCCCCGTCCCGCCCCGCCGCCCCCAGTACCAGTCCCGCTCGCAGCCTCAGAGCAGAGCCGCCACGCCCAAACTCGGCGTGGCCTCGGGGGGAGCGAGAGCGGGGCGATGCTCCTCCCCGCTGGTGGTCCTGCAGGGCGAGGAGACGCTGCCCCCGCCGCGGGGGAAGGCCAGGAAAGGCGGGTCGCTGAAGGTCCGGCTCAGCAAGCTCTTCAGAACCAAGAGCTCCAGCGGCGGCTCGGCGGGGCTGCTGGACAAGAGGCCGTCCCTGGCGTCGTCCACGTCGTCGGGGGGGAGTCTGCTGGACGTGTGGGGGTCGACCGGCAGCAACACGGAGCCCGACGCCACCAGgcTGCAGATCTCCAGGCCTCACAGTGCCTTCTCTCCGGTGACCTTCACACCTGCTTTCACCGgtgAGACGGTGTCTCTGGTTGATGTGGATATTTCTCGGAGGGGGGTGAACTCTCTCCACCCCCCgactccccctcctcctcccagaCGGAGCCTCAGTCTGCTTGatgATTTCGGGGCTCCTCCTCAGCACCACGGTCCGTTCGGGGCATCCATGCAGTCTCTGCCCCCCCGACCACTGgccctgcccccctccctcagCACCATCCAGCACAGCTTGAGCCTCaacgacaCATTCCTGCGAGTTCTTCCGAGGCCGGTCCCTCTGCGTCCCGACGGTCAGCTGCCCCCCCGCCTCGCTGCCCGCTGCCCACTCAGCCGTCCCGATGCTGGCAGCTTCGCCACCAGCCTCAGGGAGCTGGAGAAGtgtggcTGGTACTGGGGTCCGATGAACTGGGAGGACGCAGAGATGAAGCTGAAGGGGAAACCGGACGGATCCTTTCTGGTCCGGGACAGTTCAGACCCGCGGTACATCCTGAGTCTGAGCTTCAGGTCGCAGGGagtcacacaccacacacgcatGGAGCACTAcagagGGACGTTCAGTCTGTGGTGTCACCCCAAGTTTGAGGACCGCTGCCACTCGGTGGTGGAGTTCATAGAGAGAGCCATCATGCACTCCAAGAACGGGAAGTTCCTCTACTTCCTGCGCTCCAGAGTCCCTGGTCTCCCCCCGACCCCGGTCCAGCTCCTGTACCCGGTCTCGAGGTTCAGCAGTGTTAAATCTCTGCAGCATCTCTGTCGCTTCTGCATCCGTCAGCTGGTCCGGATCGACCACATCCAGGAGCTGCCGCTGCCCACGCCTCTGATCTTCTACCTGAGGAAGTTTTATTACTATGACCCCGAGGAGGAGATCAGCCGCCAGCCGGCGGTCCAGCAGCAGCCGGGGGTCCAGCAGCAGCCGGGGGTCCAGCAGCAGCCGGGGGTCCAGCTGCAGCCAGGGGTCCAGCAGCAGCCGGGGGTTCAGCCGGGGGTCCAGCAGCAGCCGGGGGTCCAGCAG

Function

symbol description
socs7 Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within intracellular signal transduction; negative regulation of signal transduction; and regulation of growth. Predicted to be part of phosphatidylinositol 3-kinase complex. Orthologous to human SOCS7 (suppressor of cytokine signaling 7).

NR:

description
PREDICTED: suppressor of cytokine signaling 7

GO: NA

KEGG:

id description
K04699 SOCS6_7; suppressor of cytokine signaling 6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039826049.1 True 2990 mRNA 0.66 9 37193977 37224889

Neighbor

gene id symbol gene type direction distance location
kpnb1 kpnb1 coding upstream 626 37177075 ~ 37193351 (+)
zgc:158376 LOC103361495,LOC101474986,LOC102781812,LOC102300501 coding upstream 26201 37146845 ~ 37167776 (+)
LOC120573828 NA coding upstream 56166 37120458 ~ 37137811 (+)
LOC120574686 wipf2,wipf2b,LOC102794289,LOC107752530,LOC107549849 coding upstream 136650 37038857 ~ 37057327 (+)
LOC120573814 NA coding upstream 244456 36946242 ~ 36949521 (+)
LOC120575334 NA coding downstream 545352 37770241 ~ 37779794 (+)
psmd3 psmd3 coding downstream 610431 37835320 ~ 37860518 (+)
LOC120575386 NA coding downstream 660607 37885496 ~ 37929643 (+)
LOC120575399 NA coding downstream 754091 37978980 ~ 37984499 (+)
LOC120575400 NA coding downstream 796885 38021774 ~ 38025116 (+)
G161264 NA non-coding upstream 20342 37173428 ~ 37173635 (+)
LOC120573858 NA non-coding upstream 203295 36986283 ~ 36990682 (+)
LOC120573813 NA non-coding upstream 247745 36945209 ~ 36946232 (+)
G161226 NA non-coding upstream 255573 36936181 ~ 36938404 (+)
G161190 NA non-coding upstream 293660 36888777 ~ 36900317 (+)
G161270 NA non-coding downstream 14472 37239361 ~ 37239731 (+)
G161360 NA non-coding downstream 89568 37314457 ~ 37314895 (+)
G161363 NA non-coding downstream 93612 37318501 ~ 37318706 (+)
G161365 NA non-coding downstream 95730 37320619 ~ 37320890 (+)
G161367 LOC106674584,LOC106674915,LOC106676464,LOC106676424,LOC106675739,LOC106675207 non-coding downstream 98454 37323343 ~ 37324169 (+)
utp18 utp18,LOC102793997,LOC101163956 other upstream 74723 37103373 ~ 37119254 (+)
LOC120574801 NA other upstream 718505 36469606 ~ 36475472 (+)
G160851 LOC102784589,LOC104964221,LOC102077593,LOC101468505,LOC102290184,LOC102208295 other upstream 1068425 36089620 ~ 36125552 (+)
LOC120575321 keratin,LOC103393440,LOC106904882 other upstream 1544993 35626515 ~ 35648984 (+)
LOC120575316 NA other upstream 2138321 35045717 ~ 35055656 (+)
LOC120575390 NA other downstream 709173 37934062 ~ 37956436 (+)
G161714 NA other downstream 1245825 38470714 ~ 38471325 (+)
G161792 cdc27 other downstream 1545818 38770707 ~ 38772216 (+)
LOC120573912 cdc27 other downstream 1557728 38782617 ~ 38784044 (+)

Expression


Co-expression Network