RNA id: XM_039826054.1


Basic Information

Item Value
RNA id XM_039826054.1
length 1788
RNA type mRNA
GC content 0.55
exon number 13
gene id psmd3
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 37835320 ~ 37860518 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAAGTATCCCACAATCCTTTGCGGTTCAAAATAGTTGCCAGTCATTGTAGCAGCAGAGTGAGGTGACAACGCAGATTTTGTATAATAATCTCGATATCTCAGCGAGTTCAGGTTAGTATTTCTCTCTCCCGGACACCATGAAGGAGACAGCGGCCAAGCGGCGCGGGGACAAAGCGGCAGCTAAAGACTCTAAAGCGGAGAAGCAGAAAGCTCCGGAGCCGCAGGACGTGGAGATGACGCCGGAGGAAGACGCAGCTAACGCGGCTAAACAACCCAAAGAGCTGGACAGCCTCACCTTGGACGATATCAGAGAACATGTGAAGCAGATAGAGAAGGCGGTGTCGGGGAAGGAGCCTCGCTTCGTGCTGCGAGCCCTCCGAGCGCTGCCGTCCACCAGCCGCCGGCTCAACACTAACGTCCTGCACAAAGCCGTCAACGGATTcttcaccaacaacaccaacacCAGAGACTTCCTGCTCAGTTTCCTGGAGGAGcCGATGGAGATGGCAGAAGGAGACGTCCAGTTCCGTCCCAGGATGGGTAAATCAGCGGCTGCTCCTCTGCTGCCGGAGGTGGAGGCTTACCTacagctgctgctggtggtTCACCTGACCAACAACAAGAGATACACAGAGGCTCAGAAAGTGTCAGACGACCTGCTGCAGAAGATTGGCTCAAAGAACCGCAGAGCTCTGGATCTGGTGGCTGCCAAGTGTTACTATTACCACGCCAGAGTGTACGAGTTCCTCCACCAGTTTGACTCCATgcgcagTTTCCTCCACACCCGTCTGCGTACGGCGACTCTGCGCCATGATGCCGACGGCCAGGCCGTCCTGCTGAACCTGCTGCTGAGGAACTACCTCCACTTCAACCTGTACGACCAGGCCGAGAAGCTGGTGTCCAAGTCCGTGTTTCCTGAACTCGCCAACAACAACGAGTGGGCCCGCTACCTCTACTACACAggtcGTATTAAGGCGATCCAGTTGGAGTACTCGGAGGCTCGCAGGACTCTGACCAACGCTCTGAGGAAAGCTCCACAACACACCGCTGTGGGCTTCAAACAGACGGTCCACAAGCTGCTGATCGTGGTGGAGCTGCTGCTGGGAGAGATTCCTGACAGACTTCAGTTCAGACAGCCGTCTCTCAAGAGGTCCCTGATGCCCTACTTCCTGCTGACTCAGGCGGTGAGAACTGGTAACCTGGCAAAGTTTAACCAGGTGTTGGAGCAGTTTGGGGAGAAGTTTCAGACCGATGGGACGTACACACTTATCATCCGCCTGAGACACAACGTCATCAAGACTGgtgtgcgTATGATCAGCCTGTCGTACTCTCGTATCTCTCTGGCCGACATCGCCCAGAAGCTGCAGCTCGACAGCCCAGAGGATGCAGAGTTCATAGTCGCCAAGGCGATCCGTGACGGAGTGATCGAGGCGAGCATCAACCACGAGAAAGGCTTCGTCCAATCAAAAGAGACCATGGACATCTACGGCACCAGAGAGCCTCAGCTGGCCTTCCATCAGAGAATCTCCTTCTGCCTGGACATCCACAACATGTCTGTCAAgGCCATGAGGTTTCCTCCTAAAGCTTAACAAGGACCTGGAGTCAGcagaggtaacacacacacacacacacacacacacacacacacacagacacagacagacacacacagacagaGGCGTCGGGAGCGTGAGCAGCAGGATCTGGAGTTTCGCCAAAGAAATGGCCGAAGATGGCGACGACAGCTTCCCATGATCCTCTCTGCTGACTTCCTGCCCGCGCGCTGA

Function

GO:

id name namespace
GO:0042176 regulation of protein catabolic process biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0000502 proteasome complex cellular_component
GO:0030234 enzyme regulator activity molecular_function

KEGG:

id description
K03033 PSMD3, RPN3; 26S proteasome regulatory subunit N3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218613 lncRNA upstream 32879 37802229 ~ 37802441 (+) True G161505
TU218583 lncRNA upstream 129379 37705619 ~ 37705941 (+) True G161476
TU218514 lncRNA upstream 148169 37635907 ~ 37687151 (+) True G161442
TU218512 lncRNA upstream 186559 37643595 ~ 37648761 (+) False G161442
TU218501 lncRNA upstream 241336 37593626 ~ 37593984 (+) True G161433
TU218639 lncRNA downstream 75755 37936273 ~ 37936719 (+) True G161520
TU218643 lncRNA downstream 97425 37957943 ~ 37962475 (+) True G161523
TU218655 lncRNA downstream 134329 37994847 ~ 38009171 (+) True G161535
TU218667 lncRNA downstream 181248 38041766 ~ 38045025 (+) True G161546
TU218679 lncRNA downstream 208976 38069494 ~ 38074567 (+) True G161558
XM_039826052.1 mRNA upstream 55526 37770241 ~ 37779794 (+) True LOC120575334
XM_039826049.1 mRNA upstream 610431 37193977 ~ 37224889 (+) True LOC120575332
XM_039824737.1 mRNA upstream 641969 37177075 ~ 37193351 (+) True kpnb1
XM_039824738.1 mRNA upstream 641969 37177075 ~ 37193351 (+) False kpnb1
XM_039824735.1 mRNA upstream 667544 37146845 ~ 37167776 (+) True zgc:158376
XM_039826156.1 mRNA downstream 24978 37885496 ~ 37929291 (+) True LOC120575386
XM_039826155.1 mRNA downstream 25756 37886274 ~ 37929643 (+) False LOC120575386
XM_039826171.1 mRNA downstream 73544 37934062 ~ 37956436 (+) True LOC120575390
XM_039826172.1 mRNA downstream 73544 37934062 ~ 37942999 (+) False LOC120575390
XM_039826173.1 mRNA downstream 73544 37934062 ~ 37942999 (+) False LOC120575390
TU218278 other upstream 716069 37115823 ~ 37119251 (+) False utp18
TU218032 other upstream 1360600 36469645 ~ 36474720 (+) False LOC120574801
TU217802 other upstream 1709768 36089620 ~ 36125552 (+) True G160851
TU217642 other upstream 2186336 35626515 ~ 35648984 (+) False LOC120575321
unassigned_transcript_885 other upstream 2597943 35237296 ~ 35237377 (+) True trnas-uga_23
XR_005641977.1 other downstream 73544 37934062 ~ 37956280 (+) False LOC120575390
TU218883 other downstream 610196 38470714 ~ 38471325 (+) True G161714
TU218981 other downstream 910189 38770707 ~ 38772216 (+) True G161792
TU218982 other downstream 922545 38783063 ~ 38784044 (+) False LOC120573912

Expression Profile