RNA id: XM_039826052.1


Basic Information

Item Value
RNA id XM_039826052.1
length 1026
RNA type mRNA
GC content 0.55
exon number 5
gene id LOC120575334
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 37770241 ~ 37779794 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgtcgcagccttttctGATGCTGGTGAATGGGACCAGTCTGTGCTCAGGCAGACTGGAGGTGAAGACTAACCAGTCTACCCAACGctggtcctcagtgtgtgaagatGATTTTGACCAGCAGGATGCAAAGGTGGTCTGTAGGGAGCTTGGCTGTGGGGCTCCTTCAATCCTCCAGGGGGCGCTCTATGGAGAAGTGGAGGCTCCAATGGGGACCAAAGAGTTCCAGTGTGGAGGCCATGAGTCTTCTCTCCTGGACTACTCTGTCAGGCTGGTGAATGGGACCAGTCTGTGCTCAGGCAGACTGGAGGTGAACACTAACCAGTCTACCCAGCGctggtcctcagtgtgtgaagcTGACTTTGACCAGCAGGATGCAGAGGTGGTCTGTAGGGAGCATGGCTGTGGGCCTCCTTCAGTCCTCCAGGGGGCGCTCTATGGAGAAGTGGAGCCTCCAATGAGGACAAAAGAGTTCCAGTGTGGAGGCCATGAGTCTGGTCTCCTGGACTGTAGAAGCTCAGGCTCAGATAGAAACACCTGCTCACCTGGAAAAGCTGTTGgactcacctgctcagAACCTGATGCTGTCAGGTTGGTGGGAGGAGCCAGTCGCTGTGCAGGAACACTGGAGCTGAAACATCAGGGAGAATGGAGAGCCGTGACGTATCATCATACTGGCTGGAACCGGAAGACATCAGCTGCTGCCTGCAGAGAGTTAGGCTGTGGCTCTGCTGTTTTTGTAGGAAAGAGATATGAGTCCTCACAAAGACCTGTGTGGGAGATCAACTCTTTCTGTGTTAGGTCTGGATATGCTCTGAGGGAGTGTGCAACATCATATTACTCTGCCTTCATCCTGACTCTCACCTGCTCAGaatcctacacaGTGAAGGCTCAGCGGGGTGGCAAGGGAGCGGGCTGCTGCTCGGTACAGCTGCTGATGATGGTGGCAGAGAGAAGAGACCTGGAAGGGATCCCACCACAGagtcctctgtctctggtgaTGTGCCCCAAAGGTCAAGCGGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218583 lncRNA upstream 64300 37705619 ~ 37705941 (+) True G161476
TU218514 lncRNA upstream 83090 37635907 ~ 37687151 (+) True G161442
TU218512 lncRNA upstream 121480 37643595 ~ 37648761 (+) False G161442
TU218501 lncRNA upstream 176257 37593626 ~ 37593984 (+) True G161433
TU218491 lncRNA upstream 208613 37559927 ~ 37561628 (+) True G161423
TU218613 lncRNA downstream 22435 37802229 ~ 37802441 (+) True G161505
TU218639 lncRNA downstream 156479 37936273 ~ 37936719 (+) True G161520
TU218643 lncRNA downstream 178149 37957943 ~ 37962475 (+) True G161523
TU218655 lncRNA downstream 215053 37994847 ~ 38009171 (+) True G161535
TU218667 lncRNA downstream 261972 38041766 ~ 38045025 (+) True G161546
XM_039826049.1 mRNA upstream 545352 37193977 ~ 37224889 (+) True LOC120575332
XM_039824737.1 mRNA upstream 576890 37177075 ~ 37193351 (+) True kpnb1
XM_039824738.1 mRNA upstream 576890 37177075 ~ 37193351 (+) False kpnb1
XM_039824735.1 mRNA upstream 602465 37146845 ~ 37167776 (+) True zgc:158376
XM_039823684.1 mRNA upstream 632430 37120466 ~ 37137811 (+) True LOC120573828
XM_039826054.1 mRNA downstream 55526 37835320 ~ 37860518 (+) True psmd3
XM_039826156.1 mRNA downstream 105702 37885496 ~ 37929291 (+) True LOC120575386
XM_039826155.1 mRNA downstream 106480 37886274 ~ 37929643 (+) False LOC120575386
XM_039826171.1 mRNA downstream 154268 37934062 ~ 37956436 (+) True LOC120575390
XM_039826172.1 mRNA downstream 154268 37934062 ~ 37942999 (+) False LOC120575390
TU218278 other upstream 650990 37115823 ~ 37119251 (+) False utp18
TU218032 other upstream 1295521 36469645 ~ 36474720 (+) False LOC120574801
TU217802 other upstream 1644689 36089620 ~ 36125552 (+) True G160851
TU217642 other upstream 2121257 35626515 ~ 35648984 (+) False LOC120575321
unassigned_transcript_885 other upstream 2532864 35237296 ~ 35237377 (+) True trnas-uga_23
XR_005641977.1 other downstream 154268 37934062 ~ 37956280 (+) False LOC120575390
TU218883 other downstream 690920 38470714 ~ 38471325 (+) True G161714
TU218981 other downstream 990913 38770707 ~ 38772216 (+) True G161792
TU218982 other downstream 1003269 38783063 ~ 38784044 (+) False LOC120573912

Expression Profile