RNA id: XM_039824735.1


Basic Information

Item Value
RNA id XM_039824735.1
length 8553
RNA type mRNA
GC content 0.49
exon number 11
gene id zgc:158376
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 37146845 ~ 37167776 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctctgcatccaTAGAGTCACCTGTGTGATGTAATCAATGCGCGtgtcactcacaacaacactgaAAGAACCACGCGCACCACCGCAGCCAGcgcgcgccacacacacacacacacacacacacacacaaacacacacaatagacacaGAGAACAATAGCCGCGCGCTGCTCTTTATTCCCAATATCTGGTTCATTTTAATGCGGTGATCTGCGGGTCTAGTTACCGCGGAGGGTTACAGCCGTGTGTCGATTTTTTAAAACACTGCGCTTCAGTTTAAAATGAGCCATTTTAGGTGTTTTGAAGGCGAAGCACCCCGGGAAGAAGAGAGGAATACCACGTTgtaaccatactgtctatgattgTAACgtgcagagagagggacagagaggtggacgcacacacagagagagagagagagagagagagagagagaagagagagagagagagagagaaaggggggagtGAATGGGCACGACTCAGTCAGCAGCACTGCGCCCTTCACTTTATCGATATCGATCAGTTTGGAGACATTTAGACCCACAGCGGGTCCGTTACAGACAGGCTATCCCGGGAGCTAGCAAGAGCACCGGAGGCTACAGCGATGGAACGCGTGTGAAGCAGCCCGGGAGCAACGGCAGCCTGGCGGACAGAGAAACAAGGAAGCGGACGGCTAGCTGCGCTACACCACCGaagctaacgttggctaacAGTTGGCTAATATTATTTCTAATGAGCGACCAAGGAGTATGCGACCTGATAcgaagagctGACTTGTTCGGGGATGTCGGGCAGTAAGGCGCTGGGCGGTGGGGCTGGCGGGGGGGCGCGGCGCAGGCGGACGCGGTGCCGGCGCTGCCAGGCCTGCAAGAGAACCGAGTGTGGAGAGTGTCACTTCTGCAAAGACATGAAGAAGTTCGGAGGGCCCGGCCGCATGAAGCAGTCCTGCCTGCTGAGACAGTGCACGGCgccggTGCTACCTCACACGGCGGTGTGTTTTGCGTGCGGCGAGGCGGGGAAGGAGGACACGGTGGACTCTGAGGAGGAGAAGTTCAGCCTCTCTCTGATGGAGTGCACCATCTGCAACGAGATCATCCACCCCAGCTGTCTCAAGATGGGTAAAGCTGAAGGAATCATCAACGATGAGATCCCAAACTGCTGGGAGTGTCCCAAGTGCCACAAGGAGGGCAAAACCAGTAAGGACCAGGCGGACGGCTCGGGGAAGCGCCGGCTGGATAACGGCGAGGTCGGCCGCTGGAAGCTCACAGACGACCCTCCCCCTAAAAAGAAAGCCCCTCCCTCcctggaggagggggggaggacGACAGAGGGGGGGcacaagaggaagaaggagaaggagctGCCGCAGGACAGCGGGCCCAAGAAGAAGatgAAGGGTGCCCACGAAAAACGCCTCAAAAAGAAACCCAAACCGGAGGCGGAGTCCAATGGTCCCACCTCGTCAGCTGGAGGTGGAGCAGCAGGACTGCAgggctcctcctcttcctcctcttcttctcaaCCCAGCGGGGGTGCAGGGGGGGCTGTGGGGGGGACGTCGAGTGCGGACCAGCGCTCTCATCACCGAGAGAAACTAGAGCGTTTCAAGAGGATGTGTCTGCTGGAGCGCCGGCCCGAGTCGTCGTCGTCGTCTTCCTCCAGCTCGGAGTCTGACTCCGAGTCAGACTCCGACGACTCCCTGAGGGGGGAGCAGGCAGGGGGCGGCTCCTCGCCGTCGTCCTCCTCCCCCGCGCCGCCTCCTCCTGTCGCCTACGGCAACAGCAGCGGGGGGCGGGCCGAGCGGGAAAGGAGCCGCAGCgagcgggagagagagagggagcgggAGCGCCGTCTGGCCGAGCTTGGCTTCAGCGCCAGCGAGGAGTCGGAGGGGGAggcgggggggaggggggaggaggaggtgcgggaggaggagcagggagggggggagaaGGCTCGGCGGAGAGAGGCGGGGCTACCGCCGCGAGGACGGAAAGCCCCGCCGGACGGAGAGGACGAAGACGCACCCGCCTCCGACAGGACCAGGAAGAACTCCGcctccctccccccaccctccccgCTCTCCTCAAATCAGATGCCTCCGTCCTCACAGCACGACGGCGGCTTCCCGGGGAAGCAGCGCAGCAACGGACAGGAGGCGCGCAACGGGCGGACACGAGGAGGCGcgggaggggggagggaaggCGGGGAGAAGGAGAACGCTAGCGGAGTTCTGAGCAATCACAGACACAGCGGCGGGAACAAAGGCAGTGGTAGCCGCGGCAACAAGATCCGCAGCAACAGTAAGGCGTCCAGGAACAGCGCCGCCCCGCCTTCCGCCTCCCTCCCCACCTCCAACGGGGGAGCAGGCGGCCTCACGATGTCAGCAATGGCGGCGTCGCCCTGCTCGCAGCCATCCCGCCTCGCCCCGCGCTCTCAGATGATGAAGCGCAGCCCGCCGGCCGTGCCCTCGCCGCCCCGGCCCGTTCAGATGGAGCGCCACCTGGTGCGGCCGCCGCCTGCCTGCCCCGAGCCCAGCTGCCTGCCGTTGGACTCTGGCTCCGCCCACATCATGACCCGCGACGTATGGCTGCGAGTCTTCACGCACCTGAGCCAAAGAGAGCTGTGCGTCTGCATGAGGGTGTGTCGCACCTGGAGCCGCTGGTGTTGTGACAAACGTCTGTGGACGCAGATCGATCTGAGCCGGCAGCGCTCCATCACCCCCCCCATGCTGAGTGGGATCATCCGCCGTCAGCCTGTCTCCCTCAACCTCGGCTACACCAACATCTCCAAGAAACAACTGATGTGGCTCATCAACCGCTTACAAGGTCTGCTGGAGCTGAATGTGTCTGGCTGTGCCTGGCCGGCGGTCTCGGCTCTGTGTCAGGCTGTCTGTCCCTGTCTGAAGCTGCTGGATCTCAGCAGAGTGGAGGACCTCAAAGACTCTCACCTGAGGGACCTGCTGGCCCCCCCACCGGACACCCGGacagCTCACGGTGAAACCAGAGTGGGGCGTTTCCAGAACATGACTGAGCTGCGATTGGCCGGTCTGGACCTGACAGACGCGTCGTCCCGCCTGCTGGTGCGTTACGTCCCTCACCTGAGTCGCTTAGACCTGAGCCAGTGTGGGAACATCAGTGACCAGACGGTGCTCACCCTCTCCTCCCCTGTCTCCCCCCTGAGAGAGAGCCTCACACACATCAACCTGGCAGgttgTGCCAAGGTGACGGAGCAGTGTGTCTCGTTGCTGCGTCGCTGTTCCTTTCTTCAGACGGTGGACCTGCGCTGCTGCTCCCTGTTGTCCTCGGAGATGGGACAGCTGCTGTCCTTCCccccccactcctcctcctcgtcctcctccacctcctcgtcctcctcttcctcgtctGCTGCCGCCACGCTCGCTGCTgctgcctcctcctcttcctcctcctcctgtcctccTGAAGACAGAACGCTGCTAAAGAACAGCTAAAACCCTCCTTAATGTTTCTGGGACTTGTGATTGGTCCAGGTGGCTCCAAGCCCCGCCCTCCGGCCTCCTTACACTACagacagaagaggaggaagaggaggaggagcctgAACATTTCTCCTCTCGTACAGAgcagatgaagaggaggaaaaacattttgggaaagTTGTGGGTAATAGTGAAAAAATAGAAACCCTGAGCATGTACATATTTGTTCTCTGTACaattttgggtgtgtgtgtatatatctgtagtTTACTGTAAATGACCCCAAAACCCTTTcactccttcttcttcttcccgtCCGTCCTACCACGCTACGACCAATCATCACGCCCCGCGTCCATCTGCAGGAAACTCTGGCGCTGCAACTACCAATAATGTGTGGATTatgttctggatgaatggatgacaGAACTCtgtctctaaaatgtggatcagtgtttcccaaagcccaacagagaaacacagacagacagccagacagactctctaaaatgtggatcagtgtttcccaaaaagcccaagatatCGTCTTCAAAGATATTGAGtgtactgtcccagaggagagaagaaactagaacatattcacatttaacaagttgacatcacacaagtttacctGTTTACTTCAGTCCCCACCCCCttcccaaaaagaaaaaaaactacaggaaGTCAGAAACTTGTAGCTTTATTTctgggcactttaaaataaaaaccagtCTGACATTTGTGTCTCGCTCGGCTAACGGTTTCCCTACGCTTCCAGTCTtcgtgctaagctaggctaacagttTCCCTCCGCTTCCAGTCTtcgtgctaagctaggctaacagttTCCCTCCGCTTCCAGTCTTCGTGCTAAGTCCGTTTCTAAAGACGGCCGCTGTGTCTCCACTTGCCGCTGCGTCTCCCGGATATACGGGCGCCAAAGACTATTGATCGgccgttttctttatttttgatagAAAAACttacaagacaaaaagttgGAGAATTTATAGATtaaaagtcggaatatttcaAGATAAAAGTATGAACAAATTTAGAAAAAAGTTGGAATGTTTTTGCCACGGTATCAAAGTCCCGCCCACACACCGGCCCGACCAATCAGGAGTCAATCCCGACTGCCAATCATGAGGTTTCAGCCCGGTTTTTACAGCATCAAAGAACTAATAAAACCCAAACTGACATCACAACCACCAAATTTCGTTGGGACATGTGATTGGATTATTTACTttgggggcggggcttatgaGCTATACTGCCCccccagccaccagggggcggtccagatgttttggcttcacttaccCTCCTAACCCAGTTACCCATAACACCCCTCCGTAGATCCACAGAGACAGACGCTGAGTTTATTCACACTGAACGTAAACCCAAACCACTGACAGTTCCAAATAAAGTTTATTCAAACGGGACAACCTTAAGATAAACCTAATACCCTGTATGTATCGTTTCAGGCACTTTTGCCTGAAACAATTAATCATTGATGAAAATATCTgctgattaattttctgtcgCTGGAATAATCCGTCAGTTTGGACGTGAGCAGCCTTCAGAGCGTGAGCGTGTTTCCTGaagataaatataaataataaagtttaGCCAAGTTTATATAGAACAAAAAGTATTGAAAGAGAGAATCATCATACCAGAGTCCAGCCAGAAAAACACTGATTCTGTAGAGACGAGGCTGCAGTCAGAGACAACtacagatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagaccgACAGCGCTGGGTGTATTTTGAATCTGAGCCTCAGTGTCTTCAACATTCGCCTCATTCATTCATCTTCCCCTCTTTGTCTTTTaacatcatcttcttcttctccctcctGTCAGTGTTCTTCACCTCTGATCCGAGTATTTTGGGAACTTATTGATTGTGTTTTCTCAGGAGTATAATTTATTTTCAGTCCAAACACACATTCCTCCTCCACAACTTTAGGTTTTGTGACTTGTTACTATTTTTCTACGCAGCGGTTCATTgttatgtgtttttcttttgttttctacaTGATGAACATTTCTTCTGTGTTTGTTCACATTGATGAATTTGAATCTTAAATCTGTGTTTTGTTACGGGAGCCCGTTTCTGCTACGTTTTGAAGAAGTTAGGAATAGATTAAAGGTCATAAGTACTCTCGGCATCAGGATTATTAACACGGAGTCTGTGGACGCAGAGTTTTCTGCAGATTTTAGACAAATTTAACAAATGAAAATCAAACCAAAACCATTTACACGTTAACAGGTTTCATTCTggatgtggacacacacacagacagacacagagacacacacacagacacacaatcatgATTTGTGTCTTATTGTCTTGGGTTGATTTTCTAATCTTGATAAATTGGTACTATCCCATAATATGGATTTATCTCAGGATTTTGAAACACTAAGACAGTAAATCAAAATTAAGATTGTGTTGTAATCTTTAGCATCAACATCCTAATTTAAGTCACTTTCTTACAGTCTCCAGATCTTGACTTTCTACATCAACGTCAACAGTTAAATTTAATAATATAAACGTCTCCTAACCTTCACTAACTGTTTCATAATCTGGATTTAGTGTTTAATAATCCTGTTAAATCTTTCAATTTATTACTTCATAATCTagagtattttttttagatttttattcctaatttcttcatctgtttttgtttttttctttgttttcttttgggtCAAATGGGCTCCCGTAGTTTTCCGATGGGgcctaatttataaaaaaaagaaaagtcagttGACCACAAACTGAATTTTACGTTTAAagcaaaaaagttaaaaatCAATGTGAGCTGCTGACGTTTGTGATGGGGGAGAAGACTAATATCTCTCCACCTGGGACTGTTTTTATCTCACTGGCTGCACtgagggaggggtgggggggtaatcaaacagccaatcagcacggaCTACAGCTACAGTAAAATCATTACAACATATGTTTTGTCAGGGTAAAGCTACACAGTGTTGTGTTAGCTACGCGGTGTCGTGTTAGCTTCGAGCGTTAGTCCCGGTAACTGCTGTGTTACCTCTGCTGCTTCTGAAGAACAAAGACGTGAAACTAAATCTTCGATTCTTTAAATTAAGTCAAGAGAGCAAGCAAGAAAAACACCGTTGTGGCGGGCAAGCTAAAGTTGGCGAGCAAGCTAAAGTTGGCGAGCAAGCTAgcaaagtttatttatagagcacctTTTTACAGACACAAAGTTACTCCCAGTCAAAGACATAACATGTTATAGTCTAGTAAATAAAGCACAGATAAAAAGACAAGTCTAAAACTAAATCCCTGTCTGAACAGCAAGATAATTAAGATTTAGTTTGAATGGTTCTAATCTTAATGTCAGAGCTGTGGAAACTTTGGTAACAACTCTATTTATACAGCTTTATTCTTCACAGAACAAAAAGTAACGAAAATGTTTCAATCCAAACCATCTTTTTCCTCAACaagttgttttggtgtcagaacttaactttattttatactttggcatataaacacacaggcaaaaacataatttaattaCTTTTCTAATTTGAGTTTTTGGGCTATTTTACTTTCTTTAAGACTATCTGgaaaagaaatgtgtttatATTACTGCACTGTTTATTTGTGTCTGTAGTAACATTAAATAACGTCTCACCTGCGTATTACAACATAACATTAAGAAAACTTGTAAAACGAAGCTAAACGTAATGGTCAGGCGACCGGCCGGCGTAATCTCGTAGAATACGAACCTGTTGGGCACAAACGCAGATTAATAGTATTACTGTTTAATCAGTCACttaatcaacagattaaacACGTGTTTTGATAATCGAGGGAACGTTTTTACAGCATTTATCAGCtaaagtacaccagaagttcaGTGATCAGCTGggataaataaacagaatatTTGTAAGTAAACTGTGAAACCTGGGAACATTTAGACCAGCGGTGtcaaactctacacacacacacacacacacacacacacttcactacGGGTTTGACAAATGAGTCACATCAAGAGACAGACGTGTAGAGTTtcttgacatgcttttattttgaaaagtcaaaCAACTTTTACTGTATTATTGTTAAAGCTAAGCTAatatagctttctcacttaGAGTTTTGGTCCACATGAAGCCCTGAAAAGAGTCCGCAACAAAAGTAACTTAgacattaaattaaaaagcaactaaaacattttatgaaatgccagaaaaagcgacaaaaacatcagaaagagTGCCAAGAGCgttggcaaaagtgacaaaacattgAAGAACTaggcgggccttgagtttgacacgtgattTAGACGTCTTTAGTTTAAGGCCGTGCAGCAGAGGTAACATGGTGTTAGACGCCCGCCGTAGTCCTGGAAACTAAAAGTATTCGTTACATTTACAATTGCCATAAACGCGTCCTTGTGCCATAAACACGCCAGATCAATGTTTTGCTGTTCAAAGgtcagtttttatattttatctttttgtaTTCGGTTTAAgatgtagttgttttttttctactgtaTGCGTGGGGATCAATAATGCATATCACAGCTTCAAACTTTACCTTGCAACAAGTGACGGGATCAAATCTGATTGGGCGAAAACCCCTGACTCGTGAAAGCTCTTATCCAATCAGACGCCCAGACATATCTGTGTTCTCTATCTAAGTCAAATCTGTTTTAAAGATGCACTGGATCATCGCCATCGTCACCTTCATCCCCGCCTTTTTGCCAAATGTAGTTTTTGTTGTGAAAATGGGCATTTTtatcctgtttttttgtttgtttttatacttTTGCCATGACTCTTCAGTTGtgttgatggaaaaaaaaatgaggaagaagttggaaagaaaaagtaaaagagagaaaaagaccaACTCAAGGCAGCTACGTACGAGTGACTACTGTAAAATGACTAACTAATAAAGAAGCAATGGTTCCTTTTTACATCCCA

Function

GO: NA

KEGG:

id description
K10285 FBXL19; F-box and leucine-rich repeat protein 19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218265 lncRNA upstream 156163 36986283 ~ 36990682 (+) True LOC120573858
XR_005641787.1 lncRNA upstream 158795 36986283 ~ 36988050 (+) False LOC120573858
XR_005641781.1 lncRNA upstream 200613 36945209 ~ 36946232 (+) True LOC120573813
TU218245 lncRNA upstream 208441 36936181 ~ 36938404 (+) True G161226
TU218196 lncRNA upstream 246528 36888777 ~ 36900317 (+) True G161190
TU218290 lncRNA downstream 5652 37173428 ~ 37173635 (+) True G161264
TU218302 lncRNA downstream 41147 37208923 ~ 37209402 (+) False G161265
TU218303 lncRNA downstream 41147 37208923 ~ 37209907 (+) False G161265
TU218305 lncRNA downstream 41147 37208923 ~ 37209907 (+) True G161265
TU218292 lncRNA downstream 41691 37209467 ~ 37209907 (+) False G161265
XM_039823683.1 mRNA upstream 9034 37120458 ~ 37137811 (+) False LOC120573828
XM_039823686.1 mRNA upstream 9034 37120458 ~ 37137811 (+) False LOC120573828
XM_039823684.1 mRNA upstream 9034 37120466 ~ 37137811 (+) True LOC120573828
XM_039823685.1 mRNA upstream 9034 37120483 ~ 37137811 (+) False LOC120573828
XM_039826091.1 mRNA upstream 27591 37103373 ~ 37119254 (+) True utp18
XM_039824737.1 mRNA downstream 9299 37177075 ~ 37193351 (+) True kpnb1
XM_039824738.1 mRNA downstream 9299 37177075 ~ 37193351 (+) False kpnb1
XM_039826049.1 mRNA downstream 26201 37193977 ~ 37224889 (+) True LOC120575332
XM_039826052.1 mRNA downstream 602465 37770241 ~ 37779794 (+) True LOC120575334
XM_039826054.1 mRNA downstream 667544 37835320 ~ 37860518 (+) True psmd3
TU218278 other upstream 27594 37115823 ~ 37119251 (+) False utp18
TU218032 other upstream 672125 36469645 ~ 36474720 (+) False LOC120574801
TU217802 other upstream 1021293 36089620 ~ 36125552 (+) True G160851
TU217642 other upstream 1497861 35626515 ~ 35648984 (+) False LOC120575321
unassigned_transcript_885 other upstream 1909468 35237296 ~ 35237377 (+) True trnas-uga_23
XR_005641977.1 other downstream 766286 37934062 ~ 37956280 (+) False LOC120575390
TU218883 other downstream 1302938 38470714 ~ 38471325 (+) True G161714
TU218981 other downstream 1602931 38770707 ~ 38772216 (+) True G161792
TU218982 other downstream 1615287 38783063 ~ 38784044 (+) False LOC120573912

Expression Profile