RNA id: TU218302


Basic Information

Item Value
RNA id TU218302
length 295
lncRNA type intronic
GC content 0.59
exon number 2
gene id G161265
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 37208923 ~ 37209907 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTACACAAACACTCCACCAGCCTCAGGGAGCTGGAGAAGGTGGGccgtctacacacacacacacacacacacaaacactccacCAGCCTCAGGGAGCTGGAGAAGGTGGGccgtctacacacacacacacacacacaaacactccacCAGCCTCAGGGAGCTGGAGAAGGTGGGccgtctacacacacacacacacacaaacactccacCAGCCTCAGGGAGCTGGAGAAGGTGGGccgtctacacacacacacaaacactccacCAGCCTCAGGGAGCTGGAGAAGGTGGgccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218290 lncRNA upstream 35288 37173428 ~ 37173635 (+) True G161264
TU218265 lncRNA upstream 218241 36986283 ~ 36990682 (+) True LOC120573858
XR_005641787.1 lncRNA upstream 220873 36986283 ~ 36988050 (+) False LOC120573858
XR_005641781.1 lncRNA upstream 262691 36945209 ~ 36946232 (+) True LOC120573813
TU218245 lncRNA upstream 270519 36936181 ~ 36938404 (+) True G161226
TU218292 lncRNA downstream 65 37209467 ~ 37209907 (+) False G161265
TU218311 lncRNA downstream 29959 37239361 ~ 37239731 (+) True G161270
TU218417 lncRNA downstream 105055 37314457 ~ 37314895 (+) True G161360
TU218420 lncRNA downstream 109099 37318501 ~ 37318706 (+) True G161363
TU218422 lncRNA downstream 111217 37320619 ~ 37320890 (+) True G161365
XM_039824737.1 mRNA upstream 15572 37177075 ~ 37193351 (+) True kpnb1
XM_039824738.1 mRNA upstream 15572 37177075 ~ 37193351 (+) False kpnb1
XM_039824735.1 mRNA upstream 41147 37146845 ~ 37167776 (+) True zgc:158376
XM_039823683.1 mRNA upstream 71112 37120458 ~ 37137811 (+) False LOC120573828
XM_039826052.1 mRNA downstream 560839 37770241 ~ 37779794 (+) True LOC120575334
XM_039826054.1 mRNA downstream 625918 37835320 ~ 37860518 (+) True psmd3
XM_039826156.1 mRNA downstream 676094 37885496 ~ 37929291 (+) True LOC120575386
XM_039826155.1 mRNA downstream 676872 37886274 ~ 37929643 (+) False LOC120575386
XM_039826171.1 mRNA downstream 724660 37934062 ~ 37956436 (+) True LOC120575390
TU218278 other upstream 89672 37115823 ~ 37119251 (+) False utp18
TU218032 other upstream 734203 36469645 ~ 36474720 (+) False LOC120574801
TU217802 other upstream 1083371 36089620 ~ 36125552 (+) True G160851
TU217642 other upstream 1559939 35626515 ~ 35648984 (+) False LOC120575321
unassigned_transcript_885 other upstream 1971546 35237296 ~ 35237377 (+) True trnas-uga_23
XR_005641977.1 other downstream 724660 37934062 ~ 37956280 (+) False LOC120575390
TU218883 other downstream 1261312 38470714 ~ 38471325 (+) True G161714
TU218981 other downstream 1561305 38770707 ~ 38772216 (+) True G161792
TU218982 other downstream 1573661 38783063 ~ 38784044 (+) False LOC120573912

Expression Profile