RNA id: XM_039824737.1


Basic Information

Item Value
RNA id XM_039824737.1
length 4542
RNA type mRNA
GC content 0.54
exon number 22
gene id kpnb1
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 37177075 ~ 37193351 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATATCCTTCCGCGGGAGAGAAGCGCGCGGCCCTTTCCCTCCCGACAACACAGGATGCAAACGGGCGGCGGTGAAGCTACGAGACGTTAACATTTAACGGACCATCCGagtgaaagtgaaaaacaacCGTGCTGTAAACCGGGGAAACTCTCCCGCCTCTTTTATCACCGACCGATCCCGCCCTGTGGCCAACTGACAGAGCTCCGTGGAAGAAATATAATCCGCCGAGAACCCTGAAACTGTGCAGCTTGTGACGGAGagaagcgagagagagagagagagagccgggGGAATGGAGCTCATCACTATCCTCGAGAAGACCGTCTCTCCAGATCGGAATGAACTGGAGGCGGCGCAGAAGTTTCTGGAGCAGGCGGCGATAGAGAACCTGCCTACATTCCTGGTGGAGTTGTCCAAAGTGTTGGCCAACCCGGGGAACACGCAGGTGGCTCGCGTTGCTGCCGGTCTGCAGGTGAAGAACTCTCTGACGTCCAAAGACCCCGACGTGAAGACGCAGTACCAGCAGAGATGGCTGGCCATCGACGGCAACGCTCGCCGCGAGATCAAGAACTACGTTTTACAGACTCTGGGCACGGAGACGTACCGGCCCAGCTCGGCGTCGCAGTGCGTCGCCGGCATCGCCTGCGCAGAGATCCCCGTTAACCAGTGGCCCGAGCTGATCCCACAGCTGGTGGCCAACGTCACGGACCCGTCCAGCACCGAACACATGAAGGAGTCCACGCTGGAGGCCATCGGGTACATCTGCCAGGACATCGACCCGGAGCAACTGCAGGAGAACGCCAACCAGATCCTGACGGCCATCATCCAGGGCATGAGGAAGGAGGAGCCCAGTAACAACGTGAAGCTGGCGGCGACCAACGCTCTGCTCAACTCGCTGGAGTTCACTAAAGCCAACTTCGACAAGGAGACGGAGAGACACTTCATCATGCAGGTGGTGTGTGAAGCGACGCAGTGTCCCGACACCAGAgtgcgtGTGGCAGCCTTACAGAACCTGGTGAAGATCATGTCTCTGTATTATCAGTACATGGAGACATACATGGGACCAGCGCTCTTCGCGATCACCATTGAGGCAATGAAGAGCGATATAGACGAGGTGGCGCTGCAGGGCATCGAGTTCTGGTCCAACGTGTGTGACGAGGAGATGGACCTGGCCATCGAGGCCTCAGAGGTCTGTGCCTCGGAGCAGGGACGCCCCCCCGAGCACACCAGCAAGTTCTACGCTAAAGGTGCTCTGCAGTACCTGGTCCCCATCCTGACGCAGACACTCACCAAACAGGACGAGAACGACGACGATGACGACTGGAACCCGTGCAAGGCGGCGGGCGTGTGTCTGATGCTGCTGGCCACCTGCTGCGAGGATGACGTGGTTCCTCACGTCCTGCCTTTCATCAAAGAACACATCAAACACCCCGACTGGCGCTACAGAGACGCCTCCGTCATGGCCTTCGGATCCATTCTGGAAGGACCCGAACTCAACCAACTAAAACCCCTCGTCATACAGGCGATGCCGACGCTGATCGAGCTGATGAAGGACCCCAGCGTGGTGGTGAGGGACACCACGGCGTGGACGGTGGGGAGGATCTGTGAGCTGCTGCCCGAAGCTGCCATCAATGACGTGTACCTGGCGCCGCTGCTGCAGTGTCTGATCGAAGGCCTGGGGGCCGAGCCCCGAGTCGCCTCCAACGTCTGCTGGGCATTCTCGTCCCTGGCTGAAGCAGCGTATGAAGCCACGGACGCTGCGGAGGACGCAGAGGAGCCCAGCACCTACTGTCTGTCCTCGTCCTTCGAGATCATCGTCCAGAAGCTTCTGGAGACCACAGACAGACCGGACGGTCACCAGAACAACCTTCGCTCTGCAGCCTACGAGGCTCTGATGGAGATCGTCAAGAACAGCGCCAAGGACTGTTACCCCGCCGTGCAGAAAACCACGCTGGTCATCATGGAGAGGCTGCAGCAGGTCCTGCAGATGGAGTCTCACATCCAGAGCACCTCGGACAGAATCCAGTTCAACGACCTGCAGTCGCTGCTGTGTGCCACTCTACAGAATGTCCTGCGTAAAGTGCAGCATCAGGACGCCCTGCAGATCTCAGACGTGGTGATGGCGTCTCTGCTCCGGATGTTTCAGAGCACCGCCGGCTCCGGGGGAGTCCAGGAAGACGCTCTGATGGCCGTGTCTACGCTGGTGGAAGtcctAGGCAGCGACTTCCAGAAATACATGGATGCCTTCAAGCCTTTCCTGGGAATCGGACTGAAGAACTACGCTGAGTATCagGTGTGTCTGGCAGCTGTGGGTCTGGTGTGTGACCTGTGCAGAGCTCTGATGTCCAACATCCTGCCGTTCTGTGACGAGATCatgcagctgctgctggagaacctTGGGAACGAGAACGTGCACCGGTCGGTGAAGCCTCAGATCCTGTCGGCGTTTGGCGACATTGCTCTGGCCATCGGAGGAGAGTTTAAGAAATACCTGGACATCGTCCTGGACACGCTGCAGCAGGCATCTCAGGCACAGGTGGacaagacgGACTACGACATGGTGGACTACCTGAATGAGTTGAGGGAGGGCTGTCTGGAGGCGTACACCGGCATCATCCAGGGCCTGAAGGGGGACCAGGAGAACGTGCACCCTGATGTGATGTTGGTTCAGCCCCGGGTGGAGTTTATTCTCTCCTTCATCCATCACATCGCCGAGGATGAAGATCATTCAGACGGAGTGGTGGCCAACGCTGCCGGACTCATCGGGGACCTGTGCACGGCGTTTGGTAAAGACGTGATGAAGCTGGTGGAGTTGCGTCCTCTCATCAACGACCTGCTGACGGAGGGCCGGCGCTCCAAAACCACCAAGACCAAAACGCTGGCCACCTGGGCCACCAAGGAGCTCCGCAAGCTCAAGAGCCAGGCCTGATTGTTGGCGGCCGGggaaacgagagagagagaactttgagagagagagaaagagagagagacatcagtgAACAATGAGGACAAACTGCCCCACTGGAATCAACTCTTGTGTCTTTGTCGCCAGTGTCCGGTCCAAGCAGAAGTCGAGTGacatgagtgtgtgagagagagacatgtgtgagagagagagagacgtgtgAGAGAGATGATGACATCACACCACCTTCAGTTCCAGCAGGTGACGACTCCCCCTAACTCCCGCCCCCATAAACTCCCCCATCCTGTGGACTGGACTATgactcccccctcctccccccccttctaaataaaaaacaacaaaacaatctcACCTTCAAGCCCTCCTCCCACAATCCACCTCTCTCGCTGTCGCTGGGCTGTCACATGACGTCACCGCACCGCCGCCCTCCCCCGCCCCGGGGggcggagggagggagggagggggggggaggatgggCGATAGATACAAAACACCACGACGAGAAAATAAAAGACTTTTGTGGaatcaaagatttaaaaaagtcaaaaaaatccGAGTGGACTTCTGTGGAAAACtttagatattatttttttttattttatttttttgctcttattttttcttctttatcttCTTCTTCCGAGCACTTAAAACAGCGAAGAAGATCCACCTGCTCCGTTTTCAGTGCTCTTATCAACAACGGCACTAAAttcctacaaaataaaagttaaaaaaaaaaaaaaaaagcaacaggcGAAGAGGAATCTTGCGAGGAGCGAGTGCCAAACTGGGAATAGCTTAGCGGAAAATAAAAGGAGTGGAAGCGAGCTGCTGGTGAAGCGTTTCACTTTTTATTTCCCCGCTGCACACTGGTTTTTGGGAGAAGGGTCACTCAccaatttttcctttttttgcttGTTTAAACAAAATTCAGAGAATTGAAGACGTTTGTATAAGGTTATATTTTTCCATTGCTATgatgaaaataaagtaaaaaaaaaaacaaatgatatgAAACATTCCCCGAGCAGTTCTGGTGATTTcggtcctttttctttttttttgtctgaggACTAACATGTTTTTGGACTTTGCTGAACAGTTTGTTTACTCGCCGCCACAAAGaaccatgatttttttttttttttttttttttttttttaacggacTTTATGGCTTGTTTTTGGGTAGCAGCAGCTCCGCGACCGCTCCTTGCTCACGGGGGGAGTTTTTGTTTTGGGACGTTTTTGTAGTTTTCTGGGCTGCAGAAACCTGTGAGAAACGCTCGGCGCCGCCGGTCCGCCTCGCTCCGGGTCTGACCCGCTTCACTTTCCCTCTCTAACCACAACCAGACACATACACGGAGACTTCCCGTCACGGCTAACAAGTGGAAGCTCTCGTTGGGAAATAGTTGAACTTTCCTTTTTTTGAGCTGAAAGTGAAGCGCTCCCAGCCTCGGAGAAGCTCTTATTTTGAAGAGGCGAGGCAGCGTAGGGAGGACGTACTCTTCCTGTGTTGATGAACCGATTTATTATTGATTGTGAATCATTAAAGCCAATCtgctttttatttcatattcaaCTTTAGTGAACTAATAAAGTCTATATTGTACTGAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006913 nucleocytoplasmic transport biological_process
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K14293 KPNB1, IPO1; importin subunit beta-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218290 lncRNA upstream 3440 37173428 ~ 37173635 (+) True G161264
TU218265 lncRNA upstream 186393 36986283 ~ 36990682 (+) True LOC120573858
XR_005641787.1 lncRNA upstream 189025 36986283 ~ 36988050 (+) False LOC120573858
XR_005641781.1 lncRNA upstream 230843 36945209 ~ 36946232 (+) True LOC120573813
TU218245 lncRNA upstream 238671 36936181 ~ 36938404 (+) True G161226
TU218302 lncRNA downstream 15572 37208923 ~ 37209402 (+) False G161265
TU218303 lncRNA downstream 15572 37208923 ~ 37209907 (+) False G161265
TU218305 lncRNA downstream 15572 37208923 ~ 37209907 (+) True G161265
TU218292 lncRNA downstream 16116 37209467 ~ 37209907 (+) False G161265
TU218311 lncRNA downstream 46010 37239361 ~ 37239731 (+) True G161270
XM_039824735.1 mRNA upstream 9299 37146845 ~ 37167776 (+) True zgc:158376
XM_039823683.1 mRNA upstream 39264 37120458 ~ 37137811 (+) False LOC120573828
XM_039823686.1 mRNA upstream 39264 37120458 ~ 37137811 (+) False LOC120573828
XM_039823684.1 mRNA upstream 39264 37120466 ~ 37137811 (+) True LOC120573828
XM_039823685.1 mRNA upstream 39264 37120483 ~ 37137811 (+) False LOC120573828
XM_039826049.1 mRNA downstream 626 37193977 ~ 37224889 (+) True LOC120575332
XM_039826052.1 mRNA downstream 576890 37770241 ~ 37779794 (+) True LOC120575334
XM_039826054.1 mRNA downstream 641969 37835320 ~ 37860518 (+) True psmd3
XM_039826156.1 mRNA downstream 692145 37885496 ~ 37929291 (+) True LOC120575386
XM_039826155.1 mRNA downstream 692923 37886274 ~ 37929643 (+) False LOC120575386
TU218278 other upstream 57824 37115823 ~ 37119251 (+) False utp18
TU218032 other upstream 702355 36469645 ~ 36474720 (+) False LOC120574801
TU217802 other upstream 1051523 36089620 ~ 36125552 (+) True G160851
TU217642 other upstream 1528091 35626515 ~ 35648984 (+) False LOC120575321
unassigned_transcript_885 other upstream 1939698 35237296 ~ 35237377 (+) True trnas-uga_23
XR_005641977.1 other downstream 740711 37934062 ~ 37956280 (+) False LOC120575390
TU218883 other downstream 1277363 38470714 ~ 38471325 (+) True G161714
TU218981 other downstream 1577356 38770707 ~ 38772216 (+) True G161792
TU218982 other downstream 1589712 38783063 ~ 38784044 (+) False LOC120573912

Expression Profile