RNA id: TU218265


Basic Information

Item Value
RNA id TU218265
length 3303
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id LOC120573858
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 36986283 ~ 36990682 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGAGACAGTGTGGATAATAACGTATTGCAGGAGTCAGGACTTTTCCACGGTGATTCACATTCAGCTTTCACTTAAGGCAAGATGGAAGAAAGGAGGATACCAAGATAAGAAGATCAAGGAGATACAGAAAGCTAAATTTGACAAGGGTCAACAGACCGAACAGCTCTCCCACAGCCAGCCTGAGAACCTGCTTTACGGTCTTAATAGCCTGGGTGAAGACTCGGGCATCAGATGGCTGAGAAAAGGATAGCCCAGAGCAAGAGGGAGCCCAGCAGAGGCTAAGAAGGAGGCAGCAAAGGAGTTCACAAACCCACATACAGCTGAAGGAGGTACTGAATGACATGTGGGGtccatttcagaaagcaggtttagtgaaaactctgagtttgctaaccctgagatgagggtaattctgggttttccgtttcagaaagagaagTAACTTAACCTCGGACTCTGTGAACCGAACCTGgttgggagcaggttttctcctttcagtctcctccctctgacacagtgcTCTTTTATTTCATCATTCATTATTCTTAATCAAGCGCATTTTAGCACAGTTTGTTacctgcatgaataaaaaaacagggttggtttattaaccatgttaggcagactataaaagttttttttctcgaacatggcatttccttttgtcgatgatcccgttgatgaagaagctgtattactttgcagggagttaaacatacgtctggagatgatattgaaaccccgacattttaatttttagataacttcctatttgagcgctatcatttttcttcccagtctatcagttatgtagcctacctaACCTTAGCCATCCTCGTATCACTAACGTCTCCCATCGTTGACATGCCCTACATCCCAGCACATTTTTtgtgttacattacatttttttttttaactcagagtttcccatctcagggtaaatcaactcagataTATCAGGGTtggactcagagtttgttaaacctcctttcTGAAACTGTCCCCTGCATTGTTAACGGCTGCTTTACCTGGTCTGTGCttgtaaacagaaacaaaaaaacaacaaccaagaGGTTACACCCCTTTTTGTTGGTACAGCCTTACTTGGGTCTAAACACAGTGACTTGGGACTTGTTCAAGACggtgaaggttaagacttgtgACTTACACATGTGTGACTTTAGACAGTTACACACCAGGGGCGTGACGAATAAGCGACGCCAATATGCAAAATAATCGGCTGTGAATATTTCACATCAAAACTATTCACACCGCAGTGCAAATTTGCCACAGTTTTCAATAAAGGTTTTGGATATTTGCGCCAGCTCATCTACCACGTCAGTCAGACAGATgctgaagagagaaagaaattgaCGAAAGATGTGATGTGAGCGGACGAGAACGAGAGAGCAGTCGGAGCAGAGGAGAGTTAACAATTAGTGGTGAAGATATGAAGTGATTGTACAGCAGCTAGATTCTGCAGTTTGAGAACAAATACATGTAGCAGCTCCTCACAATCACCAAAAGGTGTCCTGTCTGGTTTCCAGACTGCTGAGTGGAGGGACGGAGGTTAGCTTTGGGTACGTCCCAGGAAAAGCTGTAACACTAAGCAAATGTAAGCTATTAATTGAGTTTCCTCCAACTCTAAATGAGTATACAGTTAATACTCAATTGAATTCCCTCTGCAAAACAGTGTAGTATATGTCTCGGGCTTATTGTGAAAGTTAAAAACGGAAAGAATGTGCTGCCTTTGTAAAGGTTGAAAGGAGTAATAAAGTTAGCTGACGTACAGTCTGTAGTTCAGACAGCAgcctctgtgttgttgtttggtgATCCTCATAAGTGAAAACTActtgtgacaaaaacaacagttcGAAAAAATATATTGACATGCGAAATAATCGCATGGAAAAAACGTCCCTGGTGTGCAACAGCCTTTAATCTCACTTCTGATATTTTTGATTAAGAGCTACTCTACCACAAAGCCACAAACCAGAAATGTAAGACTGAAACTATGATGTCATCAGGTTACTAAGCAGCTTCATAGACAATGAATGTGAAACTAATtttgtagaataaaaaaaaacaaatgaggtTTATTATATTATTCTATTATCTATTATTCTATCTTTCTCAATtcattgtttttgaaaaagctCCTGACATATCAGATGACATCACAAATTTGAGTTTTTGGATTTTGGAGagttttttaatgtttactGACATTTTGAACACACATGTATGAATTCCCAAAGTGCCCATAGTTCCCCTTTTGCTATAAtgtaatgtgaaaaaaacttttttgcacacctcttttgtcgggcaggtgcgtaggatatgatcaaaggcAACAGATCAAAAATAGtagagagaaaatcccgcacactgaccattacgcaatgGAAAAATAtaacgtttcggtctcagacctgatgaaggtctgagaccgaaacgttgtatttttctaataaactattgcttgcgtaatggtcagtgtgcgggattttctctctgCTATAATGTAATGTACCAGACAGTTTTTGCTCCCATAAGTTTATTCATGTGTGAACTTTAAGGATAGCACTGTTTAAATAGTGCATTTATCTGTAAAACAAGCAGTAAATGGTCATTTTATGATACTTCCTGGTTATGATACATCTTAAAATATCATACATCTCAAATAGTGATCTGTAGTGAATGGATTGGACAATGCTGTAAAATGTCAGcagaaaaatgtatatatttattgcgTGTAAAAGTAGTTGATGCAAATGCACTTTTACATAGCCCTTTTGGTTTTTGTACATTCCAAACCCCATTTACTAATGAGGAAATTGTGAACATATATTTGATAGTAATAGTAATTACTGTCAAATAATGTTTATGAAGTAAATCCCATGCACTTATAAGAAAAGTCTGTAGATATATTGGTGTTGCTTGTTATAACTGtcaaagtttatataaaataaacatgtatgtGCATATAATGGAGAGTTGCTTGTTATTACTGTCaaaaaatgtttatataaagtaaaCCCCCTGCTTCAATGAGGAAAAGTCGATATAAGTGTAGCTATACCAGATAGTTGCTTTTAAATTActataaaacaatgtaatataaaGAAACCTCATATATTAAtagtaaaagtatgtatatatatatatttgatagtTGCATGTAATAACTATAAAGAACAGTTTATATAAAGTAAAACCCCATACAATAATGAGGTACAGTCTGTAGATATATTGGATAGTTGCTTGTTATTACtgtcaaataatgtttatataaagtgaAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641781.1 lncRNA upstream 40051 36945209 ~ 36946232 (+) True LOC120573813
TU218245 lncRNA upstream 47879 36936181 ~ 36938404 (+) True G161226
TU218196 lncRNA upstream 85966 36888777 ~ 36900317 (+) True G161190
XR_005641790.1 lncRNA upstream 117890 36867654 ~ 36868393 (+) True LOC120573899
TU218180 lncRNA upstream 159661 36822631 ~ 36826622 (+) False LOC120573847
TU218290 lncRNA downstream 182746 37173428 ~ 37173635 (+) True G161264
TU218302 lncRNA downstream 218241 37208923 ~ 37209402 (+) False G161265
TU218303 lncRNA downstream 218241 37208923 ~ 37209907 (+) False G161265
TU218305 lncRNA downstream 218241 37208923 ~ 37209907 (+) True G161265
TU218292 lncRNA downstream 218785 37209467 ~ 37209907 (+) False G161265
XM_039823658.1 mRNA upstream 36762 36946242 ~ 36949521 (+) True LOC120573814
XM_039826154.1 mRNA upstream 228168 36754369 ~ 36758115 (+) True LOC120575385
XM_039825255.1 mRNA upstream 510811 36469606 ~ 36475472 (+) True LOC120574801
XM_039825254.1 mRNA upstream 510811 36469606 ~ 36475472 (+) False LOC120574801
XM_039825237.1 mRNA upstream 531954 36438013 ~ 36454329 (+) True LOC120574787
XM_039825037.1 mRNA downstream 48175 37038857 ~ 37057327 (+) True LOC120574686
XM_039826091.1 mRNA downstream 112691 37103373 ~ 37119254 (+) True utp18
XM_039823683.1 mRNA downstream 129776 37120458 ~ 37137811 (+) False LOC120573828
XM_039823686.1 mRNA downstream 129776 37120458 ~ 37137811 (+) False LOC120573828
XM_039823684.1 mRNA downstream 129784 37120466 ~ 37137811 (+) True LOC120573828
TU218032 other upstream 511563 36469645 ~ 36474720 (+) False LOC120574801
TU217802 other upstream 860731 36089620 ~ 36125552 (+) True G160851
TU217642 other upstream 1337299 35626515 ~ 35648984 (+) False LOC120575321
unassigned_transcript_885 other upstream 1748906 35237296 ~ 35237377 (+) True trnas-uga_23
TU217328 other upstream 1931764 35045717 ~ 35054519 (+) True LOC120575316
TU218278 other downstream 125141 37115823 ~ 37119251 (+) False utp18
XR_005641977.1 other downstream 943380 37934062 ~ 37956280 (+) False LOC120575390
TU218883 other downstream 1480032 38470714 ~ 38471325 (+) True G161714
TU218981 other downstream 1780025 38770707 ~ 38772216 (+) True G161792
TU218982 other downstream 1792381 38783063 ~ 38784044 (+) False LOC120573912

Expression Profile