RNA id: TU218180


Basic Information

Item Value
RNA id TU218180
length 271
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id LOC120573847
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 36822622 ~ 36826623 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATGACTAGAGATTCTCTGATGAAGATCCCGAGGAATGACCTGGTGGAGAGTTTATCTGCTCAATAAGGGTCATCTGTGGCGATGCCCCGCCTCCTTCACGCTcatggggaggagggaggagaggaaggagaggaaggggagggaggagagagagggaacacAGACTTTTTGTAAACGGCTCGGAGGTCCAACCATCTTTCTCCGTCTGTCCTTTACACTATATCTGAACAACCTCTGTGAACTTTCATTATGAATAAATTTCAAAAACGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218176 lncRNA upstream 78 36813266 ~ 36822553 (+) True G161173
TU218175 lncRNA upstream 15760 36806539 ~ 36806871 (+) True G161172
TU218122 lncRNA upstream 176890 36639163 ~ 36645741 (+) True G161124
TU218114 lncRNA upstream 198461 36623705 ~ 36624170 (+) True G161116
XR_005641911.1 lncRNA upstream 278694 36543340 ~ 36543937 (+) True LOC120574819
XR_005641790.1 lncRNA downstream 41032 36867654 ~ 36868393 (+) True LOC120573899
TU218196 lncRNA downstream 62155 36888777 ~ 36900317 (+) True G161190
TU218245 lncRNA downstream 109559 36936181 ~ 36938404 (+) True G161226
XR_005641781.1 lncRNA downstream 118587 36945209 ~ 36946232 (+) True LOC120573813
XR_005641787.1 lncRNA downstream 159661 36986283 ~ 36988050 (+) False LOC120573858
XM_039826154.1 mRNA upstream 64516 36754369 ~ 36758115 (+) True LOC120575385
XM_039825255.1 mRNA upstream 347159 36469606 ~ 36475472 (+) True LOC120574801
XM_039825254.1 mRNA upstream 347159 36469606 ~ 36475472 (+) False LOC120574801
XM_039825239.1 mRNA upstream 368302 36436361 ~ 36454329 (+) False LOC120574787
XM_039823658.1 mRNA downstream 119620 36946242 ~ 36949521 (+) True LOC120573814
XM_039825037.1 mRNA downstream 212235 37038857 ~ 37057327 (+) True LOC120574686
XM_039826091.1 mRNA downstream 276751 37103373 ~ 37119254 (+) True utp18
XM_039823683.1 mRNA downstream 293836 37120458 ~ 37137811 (+) False LOC120573828
XM_039823686.1 mRNA downstream 293836 37120458 ~ 37137811 (+) False LOC120573828
TU218032 other upstream 347911 36469645 ~ 36474720 (+) False LOC120574801
TU217802 other upstream 697079 36089620 ~ 36125552 (+) True G160851
TU217642 other upstream 1173647 35626515 ~ 35648984 (+) False LOC120575321
unassigned_transcript_885 other upstream 1585254 35237296 ~ 35237377 (+) True trnas-uga_23
TU217328 other upstream 1768112 35045717 ~ 35054519 (+) True LOC120575316
TU218278 other downstream 289201 37115823 ~ 37119251 (+) False utp18
XR_005641977.1 other downstream 1107440 37934062 ~ 37956280 (+) False LOC120575390
TU218883 other downstream 1644092 38470714 ~ 38471325 (+) True G161714
TU218981 other downstream 1944085 38770707 ~ 38772216 (+) True G161792
TU218982 other downstream 1956441 38783063 ~ 38784044 (+) False LOC120573912

Expression Profile