LOC120574787


Basic Information

Item Value
gene id LOC120574787
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 36436361 ~ 36454329 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825237.1
TACAGAAAGTGAGCTGCAGGTTAACACCCAGAGATAAAACTCTGCTGCAGACAGAAGTATAAACACAGAGAGCCTGAATATCCACCTTCTCTTCAACCGTTATCTACACACAACGGGACTTTCAGAAACAAACATGGCGTTCCCTCGGCTATCTGCCTCCATGCTGTTGGCTTCATTGGTCCTTCTCTACTGGACAACGTCCTCAGCTTGGTCACATGACCCCACATCCTCCATCGTCTCACCCCCCTACAGGGTGAAGAGGGCAATGGCTTCCGGCACCAGAGAGAAAGCAGATAAATCTTTGGAAGTGGCTAATAGCGTCCTGACTGGCATCAAAGAAGTGATTGAAAAGATTGAAATCAAAAAGTTGTCAGCTGTGATAAAGAGTCTCTCCAACGTTGCCATCTTGGCGGCTGTCATCGGAGAGATGGTCTTTGCTGCTGTCAACATTGCCTTGATCTTCATCCCTCAGGAAGACGAGGTGCTGTATGGGTTTGCTGAAGTGAACAGAAAGCTGGACTCTATCTCCATCCAGATCTCCAACCTGGCAACAGACGTAGAATGGTTTAACTACGCCAGCGTCTACTCTCAAGACGAGCTCCACATCCTCAACTCCTGGAAGAAGTTCAATGAGCTTCTTCAGAACAGCAAGTTGGTAACAAATGAAGAGCAGAAACTCAGACTGGCTGAGATATTCACCAACTACTATGAGAACACAGGAACTGAGGCCAGTGTGGCCAACCTCTATCATTACCTAACAGTCAAAGGCACGTCTCTCAGTGGAAACCTCAATGAACTGCTGAGGAAGAAGTTTAAATGTGACTTTCAAGAGATCGGCAAATATAACATCTATTTCAGCAGTTTGCTGTGGAAGGGGATGATGCTGAACCAGTTCTACTGGAAACTAATCGGGTTGGATTCATCAGGTATAGAAGCTAAACACACCCAGATGTTCAGTAAAGTTTACACAGCTCAGATATCAGCTATGGAATACTGCCTGACCAACCACATGCAGTATGTGAAGGAAGACGTGGTGGAGATCAGGAAAGGATTCAGTGCTGACAACAAAGAAGTCATCGCTGATAAGGTGAAAGAGTTTCTGGATAAGAAGTACAACTGGTACAACTGGGTGGTGCTGGTGTACAACACAGACCAGGCTGATTATTACATACTATATAATCTGACTAAGATTACAGAGGACACAATCACCATCGCTGTGGGATACACTCTTATAGCAGATGAAAGGAATGATCACGTTATCCAAGGAGCTGATGAATGCTTTCAATCAAGTCAATTATGTGAAAGTAACACAGCACAAAACTGTAAGTATACGCCAAAGAACCCTAATCCATATATGGCCAGCAGTAAGGAATTGACCTTCACAGATTACGCTAAAGCGACACATGCTGCCTATGGAGAAGAGTTTGCTGTGGCTCCAGCACCCTTTCACCAAAATGACTGTTGGTGGTATCGTAGTTATTATAGACAGATTTCCATCTATTCCTCCCGGAGGTTGCCTCTCTGCCAAggtgaaacatgtatcaccaaTGGATGGTGCAAGCGGCTGCTGGACTCCAATGAATGGATGTGTAATTGTTGGGAGGGTTACTATGGTAAGAGATGTGAAGAGAGAATCCCAATTGGCAACGCTACAGCAATTCCTTTACAAGCTGTACCTGACATCAGCACCATTGacacaaaactgaaaatgaTGGAGATCAAACTGGAAGAGATTCTCAAGTCTATCAATGAAACATGTAGTGGCTAATAGGAGATATCTGCAGACCGCTGACAGACAACAGGAATGATGACTTACTGCTAACGGACAAACTGACACACATCAACTGACTGAGCATCTGAGAACGGCACCATGAAGGAAGGACAAGTAAACAATGCTCATTAAAGACTAAATTATGTTCAGGCAACAACTCTAGTCTGTAAAACCTCCTCCCAACAGTGAAGCATGTCGGGGTCAGAGATGAGTGAGATGATGAGTTGGTCTGTTGTTCTGTCTTCATTTCCGTGAATCTGTCCAGCTGATGTCAACACGACCCAAACAGtcactatactatactatgtactatatactatgtactatatactatactattcaCTATACAGGAAATACACCAGGTTTAAATATAATAATCAGAATATTAATGTCCCATTTTATTCTGACTACAAagtttatttcagttttaaacCATACATACAAACCAACCACCATAGTTGTTTCTTTTGATTAATTAAAAGCTTGAAGTTGCTGCAGTCTGTTCCAGCTCAGTGTAACTCTGTTGTTCTTCATACGACCACCAGATGGAAATAATGGGACAAGAAACTAATAAAAGATGTACTGCAtatcgttgtctttgtactactctgcacaatgacaattaaattgaatctaatctaatctaataaaaGATTTAA
>XM_039825239.1
TCAGAAACAAACATGGCGTTCCCTCGGCTATCTGCCTCCATGCTGTTGGCTTCATTGGTCCTTCTCTACTGGACAACGTCCTCAGCTTGGTCACATGACCCCACATCCTCCATCGTCTCACCCCCCTACAGGGTGAAGAGGGCAATGGCTTCCGGCACCAGAGAGAAAGCAGATAAATCTTTGGAAGTGGCTAATAGCGTCCTGACTGGCATCAAAGAAGTGATTGAAAAGATTGAAATCAAAAAGTTGTCAGCTGTGATAAAGAGTCTCTCCAACGTTGCCATCTTGGCGGCTGTCATCGGAGAGATGGTCTTTGCTGCTGTCAACATTGCCTTGATCTTCATCCCTCAGGAAGACGAGGTGCTGTATGGGTTTGCTGAAGTGAACAGAAAGCTGGACTCTATCTCCATCCAGATCTCCAACCTGGCAACAGACGTAGAATGGTTTAACTACGCCAGCGTCTACTCTCAAGACGAGCTCCACATCCTCAACTCCTGGAAGAAGTTCAATGAGCTTCTTCAGAACAGCAAGTTGGTAACAAATGAAGAGCAGAAACTCAGACTGGCTGAGATATTCACCAACTACTATGAGAACACAGGAACTGAGGCCAGTGTGGCCAACCTCTATCATTACCTAACAGTCAAAGGCACGTCTCTCAGTGGAAACCTCAATGAACTGCTGAGGAAGAAGTTTAAATGTGACTTTCAAGAGATCGGCAAATATAACATCTATTTCAGCAGTTTGCTGTGGAAGGGGATGATGCTGAACCAGTTCTACTGGAAACTAATCGGGTTGGATTCATCAGGTATAGAAGCTAAACACACCCAGATGTTCAGTAAAGTTTACACAGCTCAGATATCAGCTATGGAATACTGCCTGACCAACCACATGCAGTATGTGAAGGAAGACGTGGTGGAGATCAGGAAAGGATTCAGTGCTGACAACAAAGAAGTCATCGCTGATAAGGTGAAAGAGTTTCTGGATAAGAAGTACAACTGGTACAACTGGGTGGTGCTGGTGTACAACACAGACCAGGCTGATTATTACATACTATATAATCTGACTAAGATTACAGAGGACACAATCACCATCGCTGTGGGATACACTCTTATAGCAGATGAAAGGAATGATCACGTTATCCAAGGAGCTGATGAATGCTTTCAATCAAGTCAATTATGTGAAAGTAACACAGCACAAAACTGTAAGTATACGCCAAAGAACCCTAATCCATATATGGCCAGCAGTAAGGAATTGACCTTCACAGATTACGCTAAAGCGACACATGCTGCCTATGGAGAAGAGTTTGCTGTGGCTCCAGCACCCTTTCACCAAAATGACTGTTGGTGGTATCGTAGTTATTATAGACAGATTTCCATCTATTCCTCCCGGAGGTTGCCTCTCTGCCAAggtgaaacatgtatcaccaaTGGATGGTGCAAGCGGCTGCTGGACTCCAATGAATGGATGTGTAATTGTTGGGAGGGTTACTATGGTAAGAGATGTGAAGAGAGAATCCCAATTGGCAACGCTACAGCAATTCCTTTACAAGCTGTACCTGACATCAGCACCATTGacacaaaactgaaaatgaTGGAGATCAAACTGGAAGAGATTCTCAAGTCTATCAATGAAACATGTAGTGGCTAATAGGAGATATCTGCAGACCGCTGACAGACAACAGGAATGATGACTTACTGCTAACGGACAAACTGACACACATCAACTGACTGAGCATCTGAGAACGGCACCATGAAGGAAGGACAAGTAAACAATGCTCATTAAAGACTAAATTATGTTCAGGCAACAACTCTAGTCTGTAAAACCTCCTCCCAACAGTGAAGCATGTCGGGGTCAGAGATGAGTGAGATGATGAGTTGGTCTGTTGTTCTGTCTTCATTTCCGTGAATCTGTCCAGCTGATGTCAACACGACCCAAACAGtcactatactatactatgtactatatactatgtactatatactatactattcaCTATACAGGAAATACACCAGGTTTAAATATAATAATCAGAATATTAATGTCCCATTTTATTCTGACTACAAagtttatttcagttttaaacCATACATACAAACCAACCACCATAGTTGTTTCTTTTGATTAATTAAAAGCTTGAAGTTGCTGCAGTCTGTTCCAGCTCAGTGTAACTCTGTTGTTCTTCATACGACCACCAGATGGAAATAATGGGACAAGAAACTAATAAAAGATGTACTGCAtatcgttgtctttgtactactctgcacaatgacaattaaattgaatctaatctaatctaataaaaGATTTAA

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825237.1 True 2430 mRNA 0.42 2 36438013 36454329
XM_039825239.1 False 2309 mRNA 0.42 2 36436361 36454329

Neighbor

gene id symbol gene type direction distance location
LOC120574797 NA coding upstream 35169 36388622 ~ 36401192 (+)
LOC120574805 pnmt coding upstream 71667 36357080 ~ 36364694 (+)
LOC120574800 NA coding upstream 96166 36332412 ~ 36340195 (+)
LOC120575326 NA coding upstream 159772 36273243 ~ 36276589 (+)
LOC120575325 LOC106536055,LOC106675381,LOC108249197 coding upstream 192794 36240456 ~ 36243567 (+)
LOC120575385 NA coding downstream 300040 36754369 ~ 36758115 (+)
LOC120573814 NA coding downstream 491913 36946242 ~ 36949521 (+)
LOC120574686 wipf2,wipf2b,LOC102794289,LOC107752530,LOC107549849 coding downstream 584528 37038857 ~ 37057327 (+)
LOC120573828 NA coding downstream 666129 37120458 ~ 37137811 (+)
zgc:158376 LOC103361495,LOC101474986,LOC102781812,LOC102300501 coding downstream 692516 37146845 ~ 37167776 (+)
G160906 NA non-coding upstream 121057 36252921 ~ 36315304 (+)
LOC120574820 NA non-coding upstream 163517 36272395 ~ 36272844 (+)
LOC120574817 LOC107690107 non-coding upstream 163988 36271803 ~ 36272373 (+)
G160895 NA non-coding upstream 169434 36206348 ~ 36266927 (+)
G160884 NA non-coding upstream 273395 36162761 ~ 36162966 (+)
LOC120574819 NA non-coding downstream 89011 36543340 ~ 36543937 (+)
G161116 NA non-coding downstream 169376 36623705 ~ 36624170 (+)
G161124 NA non-coding downstream 184834 36639163 ~ 36645741 (+)
G161172 NA non-coding downstream 352210 36806539 ~ 36806871 (+)
G161173 NA non-coding downstream 358937 36813266 ~ 36822553 (+)
G160851 LOC102784589,LOC104964221,LOC102077593,LOC101468505,LOC102290184,LOC102208295 other upstream 310809 36089620 ~ 36125552 (+)
LOC120575321 keratin,LOC103393440,LOC106904882 other upstream 787377 35626515 ~ 35648984 (+)
LOC120575316 NA other upstream 1380705 35045717 ~ 35055656 (+)
G160423 mvp other upstream 1469412 34962100 ~ 34966949 (+)
LOC120574901 NA other upstream 1507886 34849589 ~ 34928475 (+)
LOC120574801 NA other downstream 15277 36469606 ~ 36475472 (+)
utp18 utp18,LOC102793997,LOC101163956 other downstream 649044 37103373 ~ 37119254 (+)
LOC120575390 NA other downstream 1479733 37934062 ~ 37956436 (+)
G161714 NA other downstream 2016385 38470714 ~ 38471325 (+)
G161792 cdc27 other downstream 2316378 38770707 ~ 38772216 (+)

Expression


Co-expression Network