RNA id: XM_039825237.1


Basic Information

Item Value
RNA id XM_039825237.1
length 2430
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC120574787
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 36436361 ~ 36454329 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACAGAAAGTGAGCTGCAGGTTAACACCCAGAGATAAAACTCTGCTGCAGACAGAAGTATAAACACAGAGAGCCTGAATATCCACCTTCTCTTCAACCGTTATCTACACACAACGGGACTTTCAGAAACAAACATGGCGTTCCCTCGGCTATCTGCCTCCATGCTGTTGGCTTCATTGGTCCTTCTCTACTGGACAACGTCCTCAGCTTGGTCACATGACCCCACATCCTCCATCGTCTCACCCCCCTACAGGGTGAAGAGGGCAATGGCTTCCGGCACCAGAGAGAAAGCAGATAAATCTTTGGAAGTGGCTAATAGCGTCCTGACTGGCATCAAAGAAGTGATTGAAAAGATTGAAATCAAAAAGTTGTCAGCTGTGATAAAGAGTCTCTCCAACGTTGCCATCTTGGCGGCTGTCATCGGAGAGATGGTCTTTGCTGCTGTCAACATTGCCTTGATCTTCATCCCTCAGGAAGACGAGGTGCTGTATGGGTTTGCTGAAGTGAACAGAAAGCTGGACTCTATCTCCATCCAGATCTCCAACCTGGCAACAGACGTAGAATGGTTTAACTACGCCAGCGTCTACTCTCAAGACGAGCTCCACATCCTCAACTCCTGGAAGAAGTTCAATGAGCTTCTTCAGAACAGCAAGTTGGTAACAAATGAAGAGCAGAAACTCAGACTGGCTGAGATATTCACCAACTACTATGAGAACACAGGAACTGAGGCCAGTGTGGCCAACCTCTATCATTACCTAACAGTCAAAGGCACGTCTCTCAGTGGAAACCTCAATGAACTGCTGAGGAAGAAGTTTAAATGTGACTTTCAAGAGATCGGCAAATATAACATCTATTTCAGCAGTTTGCTGTGGAAGGGGATGATGCTGAACCAGTTCTACTGGAAACTAATCGGGTTGGATTCATCAGGTATAGAAGCTAAACACACCCAGATGTTCAGTAAAGTTTACACAGCTCAGATATCAGCTATGGAATACTGCCTGACCAACCACATGCAGTATGTGAAGGAAGACGTGGTGGAGATCAGGAAAGGATTCAGTGCTGACAACAAAGAAGTCATCGCTGATAAGGTGAAAGAGTTTCTGGATAAGAAGTACAACTGGTACAACTGGGTGGTGCTGGTGTACAACACAGACCAGGCTGATTATTACATACTATATAATCTGACTAAGATTACAGAGGACACAATCACCATCGCTGTGGGATACACTCTTATAGCAGATGAAAGGAATGATCACGTTATCCAAGGAGCTGATGAATGCTTTCAATCAAGTCAATTATGTGAAAGTAACACAGCACAAAACTGTAAGTATACGCCAAAGAACCCTAATCCATATATGGCCAGCAGTAAGGAATTGACCTTCACAGATTACGCTAAAGCGACACATGCTGCCTATGGAGAAGAGTTTGCTGTGGCTCCAGCACCCTTTCACCAAAATGACTGTTGGTGGTATCGTAGTTATTATAGACAGATTTCCATCTATTCCTCCCGGAGGTTGCCTCTCTGCCAAggtgaaacatgtatcaccaaTGGATGGTGCAAGCGGCTGCTGGACTCCAATGAATGGATGTGTAATTGTTGGGAGGGTTACTATGGTAAGAGATGTGAAGAGAGAATCCCAATTGGCAACGCTACAGCAATTCCTTTACAAGCTGTACCTGACATCAGCACCATTGacacaaaactgaaaatgaTGGAGATCAAACTGGAAGAGATTCTCAAGTCTATCAATGAAACATGTAGTGGCTAATAGGAGATATCTGCAGACCGCTGACAGACAACAGGAATGATGACTTACTGCTAACGGACAAACTGACACACATCAACTGACTGAGCATCTGAGAACGGCACCATGAAGGAAGGACAAGTAAACAATGCTCATTAAAGACTAAATTATGTTCAGGCAACAACTCTAGTCTGTAAAACCTCCTCCCAACAGTGAAGCATGTCGGGGTCAGAGATGAGTGAGATGATGAGTTGGTCTGTTGTTCTGTCTTCATTTCCGTGAATCTGTCCAGCTGATGTCAACACGACCCAAACAGtcactatactatactatgtactatatactatgtactatatactatactattcaCTATACAGGAAATACACCAGGTTTAAATATAATAATCAGAATATTAATGTCCCATTTTATTCTGACTACAAagtttatttcagttttaaacCATACATACAAACCAACCACCATAGTTGTTTCTTTTGATTAATTAAAAGCTTGAAGTTGCTGCAGTCTGTTCCAGCTCAGTGTAACTCTGTTGTTCTTCATACGACCACCAGATGGAAATAATGGGACAAGAAACTAATAAAAGATGTACTGCAtatcgttgtctttgtactactctgcacaatgacaattaaattgaatctaatctaatctaataaaaGATTTAA

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217860 lncRNA upstream 122709 36252921 ~ 36315304 (+) True G160906
XR_005641912.1 lncRNA upstream 165169 36272395 ~ 36272844 (+) True LOC120574820
XR_005641909.1 lncRNA upstream 165640 36271803 ~ 36272373 (+) True LOC120574817
TU217848 lncRNA upstream 171086 36206348 ~ 36266927 (+) True G160895
TU217835 lncRNA upstream 275047 36162761 ~ 36162966 (+) True G160884
XR_005641911.1 lncRNA downstream 89011 36543340 ~ 36543937 (+) True LOC120574819
TU218114 lncRNA downstream 169376 36623705 ~ 36624170 (+) True G161116
TU218122 lncRNA downstream 184834 36639163 ~ 36645741 (+) True G161124
TU218175 lncRNA downstream 352210 36806539 ~ 36806871 (+) True G161172
TU218176 lncRNA downstream 358937 36813266 ~ 36822553 (+) True G161173
XM_039825250.1 mRNA upstream 36821 36388622 ~ 36401192 (+) True LOC120574797
XM_039825249.1 mRNA upstream 36821 36388625 ~ 36401192 (+) False LOC120574797
XM_039825259.1 mRNA upstream 73319 36357080 ~ 36364694 (+) True LOC120574805
XM_039825253.1 mRNA upstream 97818 36332412 ~ 36340195 (+) True LOC120574800
XM_039825255.1 mRNA downstream 15277 36469606 ~ 36475472 (+) True LOC120574801
XM_039825254.1 mRNA downstream 15277 36469606 ~ 36475472 (+) False LOC120574801
XM_039826154.1 mRNA downstream 300040 36754369 ~ 36758115 (+) True LOC120575385
XM_039823658.1 mRNA downstream 491913 36946242 ~ 36949521 (+) True LOC120573814
XM_039825037.1 mRNA downstream 584528 37038857 ~ 37057327 (+) True LOC120574686
TU217802 other upstream 312461 36089620 ~ 36125552 (+) True G160851
TU217642 other upstream 789029 35626515 ~ 35648984 (+) False LOC120575321
unassigned_transcript_885 other upstream 1200636 35237296 ~ 35237377 (+) True trnas-uga_23
TU217328 other upstream 1383494 35045717 ~ 35054519 (+) True LOC120575316
TU217208 other upstream 1471064 34962100 ~ 34966949 (+) True G160423
TU218032 other downstream 15316 36469645 ~ 36474720 (+) False LOC120574801
TU218278 other downstream 661494 37115823 ~ 37119251 (+) False utp18
XR_005641977.1 other downstream 1479733 37934062 ~ 37956280 (+) False LOC120575390
TU218883 other downstream 2016385 38470714 ~ 38471325 (+) True G161714
TU218981 other downstream 2316378 38770707 ~ 38772216 (+) True G161792

Expression Profile