RNA id: TU217848


Basic Information

Item Value
RNA id TU217848
length 264
lncRNA type read_through
GC content 0.49
exon number 2
gene id G160895
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 36206348 ~ 36266927 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctcacacacacacacacacacacacacacacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacacacacacacaaacacacacacacacacacacacacacacaaagacacacacacacacacacacacacacacacacacacacacacacacacacacacacagatacacatcaaacaaacaacgcatttcccggggcgaggcaggggagagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217835 lncRNA upstream 43382 36162761 ~ 36162966 (+) True G160884
TU217834 lncRNA upstream 50568 36155433 ~ 36155780 (+) True G160883
TU217832 lncRNA upstream 64758 36141238 ~ 36141590 (+) True G160881
TU217831 lncRNA upstream 65569 36140466 ~ 36140779 (+) True G160880
TU217829 lncRNA upstream 67022 36138974 ~ 36139326 (+) True G160878
XR_005641909.1 lncRNA downstream 4876 36271803 ~ 36272373 (+) True LOC120574817
XR_005641912.1 lncRNA downstream 5468 36272395 ~ 36272844 (+) True LOC120574820
XR_005641911.1 lncRNA downstream 276413 36543340 ~ 36543937 (+) True LOC120574819
TU218114 lncRNA downstream 356778 36623705 ~ 36624170 (+) True G161116
TU218122 lncRNA downstream 372236 36639163 ~ 36645741 (+) True G161124
XM_039825251.1 mRNA upstream 24920 36174389 ~ 36181428 (+) True thoc6
XM_039825258.1 mRNA upstream 117649 36043144 ~ 36088699 (+) True stx1b
XM_039826037.1 mRNA upstream 571349 35626521 ~ 35634999 (+) True LOC120575321
XM_039825243.1 mRNA upstream 613208 35586779 ~ 35593140 (+) True LOC120574792
XM_039825248.1 mRNA upstream 648975 35540809 ~ 35557373 (+) True LOC120574796
XM_039826043.1 mRNA downstream 6316 36273243 ~ 36276589 (+) True LOC120575326
XM_039825253.1 mRNA downstream 65485 36332412 ~ 36340195 (+) True LOC120574800
XM_039825252.1 mRNA downstream 65485 36332412 ~ 36340195 (+) False LOC120574800
XM_039825259.1 mRNA downstream 90153 36357080 ~ 36364694 (+) True LOC120574805
XM_039825250.1 mRNA downstream 121695 36388622 ~ 36401192 (+) True LOC120574797
TU217802 other upstream 80796 36089620 ~ 36125552 (+) True G160851
TU217642 other upstream 557364 35626515 ~ 35648984 (+) False LOC120575321
unassigned_transcript_885 other upstream 968971 35237296 ~ 35237377 (+) True trnas-uga_23
TU217328 other upstream 1151829 35045717 ~ 35054519 (+) True LOC120575316
TU217208 other upstream 1239399 34962100 ~ 34966949 (+) True G160423
TU218032 other downstream 202718 36469645 ~ 36474720 (+) False LOC120574801
TU218278 other downstream 848896 37115823 ~ 37119251 (+) False utp18
XR_005641977.1 other downstream 1667135 37934062 ~ 37956280 (+) False LOC120575390
TU218883 other downstream 2203787 38470714 ~ 38471325 (+) True G161714
TU218981 other downstream 2503780 38770707 ~ 38772216 (+) True G161792

Expression Profile