RNA id: TU217208


Basic Information

Item Value
RNA id TU217208
length 2042
RNA type TUCP
GC content 0.47
exon number 4
gene id G160423
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 34962100 ~ 34966949 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCAGAAAGAAACTCTAATCTGCGTTTCTTGGTTTGTGTTCAGGCACGAGGCGGAGCGCCTGGAGCAGGAGGCCCGGGGCAAGCTGGAGAGGCAGAGGATCACCGACCAGGCCGAGGCCGAGAAGGCCAGGAAGGAGCTGCTGGAGCTGGAGGCTCTCAGcgcGGCGGTGGAGAGTACGGGAGCGGCCAAGGCCGAGGCTCAGTCCCGGGCCGAGGCGGCTCGTATTCAGGGAGAGGCGGCGGTCAACGAGGCCAAGCTGAAGGCCGAAGCTCAGAGGATCGAGGCGGAGGCGGAGCTCCAGCGGCTGGCGAAGGCCCGTGAGCAGGAGCTGGCCTATAAGAAGCAGATGGACGCTCTGGAGGTGGAGAAGCAGAAGAATCTGGCTCACATCGAGAGCGAGCGCTTCAGTCAGCTGGTGGAGAGTCTGGGCAGCGACACGCTGAAGGAGATGGCCAGAGCCGGGCCCGAGCTGCAGGTGAAACTGCTGCAGGCTCTGGGGCTGAAGTCGACTCTCATCACAGACGGCGCTTCTCCCATCAACCTCTTCACCACCGCCAACGGCCTGCTGGGGGCGCTGCCGGGGCCGGGACAGGgacagggacagtgaggaggaagaggaggaacagACTGTCCAAAAGTAAACCCCAACTGACACTTTAGGCCATGATCACACTCGGCGTCTTTTTTAATTTAGGGCAGAGTTTTGGTTCCAAAAATCAGCCGAGAGCGTCTTTTGTTGCTATGACAACCACTGCTACAATATACAAAGAGCGCTATGAGGAGTGACGCAAGATAAAACAAAGTCAATCGAGcaagtccctttttttttttttaaatgttcttgtcgctttttttggacatttctgtttctgacgtcaatgtttttgtctttttttttttcgaggcTTCAAAGCTAAAGAATGAACAGAGTcactttttctatgttttttgctgtattttccgacattttcttctctttttgcaACGTTTGTGTCTTTTTACCCAACTTTTctgaagagagaaaacaaagccaGTTCCCTGAACAGGAACCACCCGCTCCTATAATATAACTCGCTGTGCTCCGACTACCCTTTCttgattgttgttgttatggaaaCAACAGGTCCCGCTACTCCACCTGCCATTGGTCAGCTGTCAAAATAGCACTTTTTAAAGACGCGCTGAGCTCCAAAGTGGTGGTGGCGTTTAAAAAAAGCGCTCAAGACTTTTTTGAAAAACACGGTTTACTCCATATAGGATTATAATATAACACAGACGCCGGCAGCTTAAAAAAACAGATGCCAAGTGTGAACAAAGATTTTGTGCTTCTGACGGCCGACTTTAAATGTGCCTTTTTGATTTTAAGACACTCCATGGGTTTGTTAAAgaaccattcattcattcaaccaaCCTTTTATTCATACTTCAGGGATCATTGAGGGGCAACCCTTATTTACACACTTGCATCGAAAACAACACTGAGAAGAAGCAATACTACTAATATACCGCTGCTAAAGAAAACCCTCTGTATATGTTTGTCTCTGGAACAACATCCACACTCTGCGTCTTTAAAAATCAACTATTTGTTATATAGAAAACTCTGGGGTTTTTAAGACCTAAAACTTAAAAATGAACTGACGAGGACTAAACCAAAACAGTTCTCTGTCTCTTTCGGGACCAATTTTGCACTTTGAGCTCTCCAAATGAGAATCTGAGGTTTACTTTTGGACAGAAAACCAGGGTGACGACATGGCGTTTGTTAACATTTTAACAAAACGTCTGCTGCaaaattaagaaaatgtgccTACAAACACGTCCGACGGTTTGTTTAGTCCTATAATCTGACAGCCAAAGAGTCCTCTTCCAGCTTTGCACTACTTCCCAGAAATTGAAATAAATGGTAAATGCTGTTGACATCGCCGATGTGTGAAACTTTGTGTGCAGTAAAGCTaaaataacagcaggacagtctGGCTGTCTGTCTTTATAAAGTGCTGTTTCTAAGAACTGTGTGAAGACATTAAAATGTTGCTGCTGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217295 lncRNA upstream 28816 34930339 ~ 34933284 (+) False G160468
TU217296 lncRNA upstream 28996 34930339 ~ 34933104 (+) True G160468
TU217287 lncRNA upstream 61219 34900482 ~ 34900881 (+) False LOC120574901
TU217274 lncRNA upstream 103223 34849615 ~ 34858877 (+) False LOC120574901
TU217262 lncRNA upstream 128966 34832905 ~ 34833134 (+) True G160460
TU217324 lncRNA downstream 43711 35010660 ~ 35012150 (+) True G160489
TU217327 lncRNA downstream 78768 35045717 ~ 35046182 (+) False LOC120575316
XR_005641931.1 lncRNA downstream 88999 35055948 ~ 35068196 (+) True LOC120574935
XR_005641932.1 lncRNA downstream 88999 35055948 ~ 35065415 (+) False LOC120574935
TU217495 lncRNA downstream 150036 35116985 ~ 35119434 (+) False G160626
XM_039825409.1 mRNA upstream 33625 34849589 ~ 34928475 (+) True LOC120574901
XM_039825415.1 mRNA upstream 114332 34837814 ~ 34847768 (+) True LOC120574908
XM_039825423.1 mRNA upstream 133535 34819773 ~ 34828565 (+) True LOC120574911
XM_039825422.1 mRNA upstream 133535 34820202 ~ 34828565 (+) False LOC120574911
XM_039825424.1 mRNA upstream 133535 34820202 ~ 34828565 (+) False LOC120574911
XM_039826034.1 mRNA downstream 79162 35046111 ~ 35055656 (+) False LOC120575316
XM_039826224.1 mRNA downstream 133173 35100122 ~ 35116962 (+) True casc3
XM_039826227.1 mRNA downstream 158520 35125469 ~ 35161048 (+) True rapgefl1
XM_039826226.1 mRNA downstream 158520 35125469 ~ 35161048 (+) False rapgefl1
XM_039826228.1 mRNA downstream 213291 35180240 ~ 35185392 (+) True LOC120575436
TU217078 other upstream 778439 34183099 ~ 34183661 (+) True G160318
TU216984 other upstream 794454 34167080 ~ 34167646 (+) True G160243
unassigned_transcript_884 other upstream 1327962 33634065 ~ 33634138 (+) True trnap-agg_19
unassigned_transcript_883 other upstream 1342893 33619137 ~ 33619207 (+) True trnap-agg_18
unassigned_transcript_873 other upstream 1366721 33595308 ~ 33595379 (+) True trnap-cgg_4
TU217328 other downstream 78768 35045717 ~ 35054519 (+) True LOC120575316
unassigned_transcript_885 other downstream 270347 35237296 ~ 35237377 (+) True trnas-uga_23
TU217642 other downstream 659566 35626515 ~ 35648984 (+) False LOC120575321
TU217802 other downstream 1122671 36089620 ~ 36125552 (+) True G160851
TU218032 other downstream 1502696 36469645 ~ 36474720 (+) False LOC120574801

Expression Profile