casc3 (LOC106600823)


Basic Information

Item Value
gene id casc3
gene name LOC106600823
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 35100122 ~ 35116962 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039826224.1
TTCCGGTTCCAACCATTCGAGACCTAAGATGGCGGACCGGCGGCGAAGGAGGAGGACGAGGCGCGCGTCCCAGGACAGCGAGGACGACGACGAGTCTGGTTCGGGTTCGGACAACGGGAGGTCAGCCTCCCCGACCACCAAGCCCCGCGTGAGAGACCCAGAGCCGCCCGAGGAGACTACAGCAGCGATCCGGCCCGAGCCCAAACCCGTTGTGGAGTCCGAGTGTGAGAGTGAAGACGGTGTAGGAGAAGCTGTCCTCTCTGACTACGACAGTGCCGACGCGGAGGAAAACGGCTCCCATTCAGAGGGagcggaggaggaagaggaggcgggGCAATACAGCGACGAAGAAGCTCCGGCAGCCGCAGCCAGCGAGCCCAAACCCTCTGCCGCCGCTGCTGCAGCCGATGAACCGACAAAGGTAGAgggggaggaagaagaggaggaggagggggaggtggtggaggaagaagagggggaGGATGAAGAGAAGGAGGCGGAGTCGGAGGAAGGAGGACAGGGTAAAGAGGACAGCAAGGCAGAGGAGAAGGGAAACCTCGCCGGGGAGAGACAGAGCGGCGACGGACAGGAGTCCACAGACGACCCCGAGACGAAGGCGGGGGGCAAACCGGGTCAGAAGCTCGACGACGACGAGGACAGGAAGAACCCGGCCTACATCCCGAGGAAGGGTCTGTTCTTCGAGCACGATGTCCGAGGACATgctcaggaggaggagagACCGAAaggtcgaaacaggaagttgtggAAAGACGAGGGTCGCTGGGAGCATGACCGCTTCAGGGAGGAGGAGCAGGCGCCGAAGAGCCGCGAGGAGCTCATCGCCATCTACGGTTACGACATCCGAAACGGCGGCGGCTCCGGAGACCGACACTACCGGCAGCAGCGCCGGCCGAGACAGAGTACGTCTCCCAGCAGAGACAAGCGGTGGGGAGGCGGAGAGCGGCCAGTCCGGTCCTGGCAGCAGAGCGGCACTCCGAACCGAGGAGGCGCGCCGCCCCCATCCAACCCGCCGTCCTCCGCGCCCCCCTCGTCTCTGCCCCTCTCCTCTCAGCGCAGCGGCAATCCGTCCCGGCCGCCTCCCTTCCGCAGCCGACCCTCCCACCACAATCAAATGCACCCCGCGCCTCAGTCTCAGTACAGGAACAGCGAATCGAACGCTCCCCAGGTGCACCCCAGGGAACGACAGGGCCCCAAAGCTCAGTCTGACCCGGCGGGAGACAGGGGCGTGGGCAGCAGGGGCAGCGGGGGCAGGGGCCCCTCCGTGGTCGTTGAGGATATTACGTTCAGCCACGGCGGCGTTCGGGAACAGGACCCAGGTGTCGCCACAGCGGCGGCGTCCCAGTCTGCGTCTCCGAGACGGCAGCAGCAGGACCAACGCAGCAGCGCCGACAGATCTGCGTCCGGATTGGAGCATCCCGCCTCCGACGCCTCGTCGCAGGCGCCCTCGGCCAACCAGGACATCTCTCCGCCTGCCGAGCGGCCGGCGATGGAGCGTAAGTCTTACTCGCTGGCTCGCAGGACTCGCTCTCGGCCCGCCGACCTGGGCAGCAAGCAGCCGTCCGTGGAGGAGTCGGGAGCCGCCGCCGCCTCCCCATCCCCCGGCAGCGTGGGAGGGAAGAGCTGGGCGGGCGACGGACCGAGCCAGACGGGGGTCACGGGAGGGCTGGCGGAGATGGACCAGAACTTGGCTCGACTCAGTCTGGCGGGACAGAGCTGGAGCCAGAGCCCGACGTCCTACATCCGCACGGAGATGAAAGGCCTGCCCAATGCCATGCACATCCCCGGCGGCCCGCCCCCCTTCTCCGCCATGGAGGAGATGGGCGTCGGCTCCAATCGAGCCAAGCGCTACTCGTCCCAACGGCAGAGAGCCGTGCCAGAGCCGGCGCCACCGCCCATGCACCTGGGAGTGATGGAGGGACACTACTACGAACCCATGTCGTACCAGGGACCAATCTATGCCCACGGGGACGGCCCCGCCCCCATCCCGCCACAAGGCATGCTGGTCCAGCCAGAGATGCACATCCCCCACCCCGgTCTCCATCCCCACCAATCAGGCGGCCCCATCGCTAACCCCCCGCTCTACGGCGGCCCGCCTGTTTCGCTGTCGCCAGGGCAACCGCAGCAGCTGCTGCCGCCGCCGTTCTACCCTCCGCCAGGCGTCATGACCTTCCCTTACCCCACCATGTACCCGACTCCACAGGGTCAGGCCCAGGTGACCTGAGGCGTGACGTATTACGCACGAATACATCGCAGCAGGCTCAGCCCAAGCCTTTCACCCCGCACCTCCCAGCCCGTCACCATCAAGCCCCCTCCGGAGTTGCACTTCGCCACAGAGTGA

Function

NR:

description
PREDICTED: protein CASC3-like

GO: NA

KEGG:

id description
K14323 CASC3, MLN51; protein CASC3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039826224.1 True 2359 mRNA 0.67 13 35100122 35116962

Neighbor

gene id symbol gene type direction distance location
LOC120574900 NA coding upstream 113282 34706079 ~ 34986840 (+)
LOC120574908 NA coding upstream 252354 34837814 ~ 34847768 (+)
LOC120574911 LOC101470943,LOC102790796 coding upstream 271557 34819773 ~ 34828565 (+)
LOC120574909 NA coding upstream 281051 34790728 ~ 34819071 (+)
si:ch73-366l1.5 NA coding upstream 426290 34652553 ~ 34673832 (+)
rapgefl1 rapgefl1,LOC106600822 coding downstream 8507 35125469 ~ 35161048 (+)
LOC120575436 LOC102235047,LOC107085218,LOC108249238,LOC103371580,LOC106934529,LOC106528082,LOC103146874 coding downstream 63278 35180240 ~ 35185392 (+)
LOC120573884 NA coding downstream 110274 35227236 ~ 35245200 (+)
trnas-uga_23 NA coding downstream 120334 35237296 ~ 35237377 (+)
LOC120574781 NA coding downstream 174714 35291676 ~ 35298784 (+)
LOC120574935 NA non-coding upstream 31926 35055948 ~ 35068196 (+)
G160489 NA non-coding upstream 87972 35010660 ~ 35012150 (+)
G160468 NA non-coding upstream 166838 34930339 ~ 34933284 (+)
G160460 NA non-coding upstream 266988 34832905 ~ 34833134 (+)
G160459 NA non-coding upstream 267250 34832651 ~ 34832872 (+)
G160626 NA non-coding downstream 23 35116985 ~ 35119434 (+)
G160630 NA non-coding downstream 18095 35135057 ~ 35154370 (+)
G160631 NA non-coding downstream 47631 35164593 ~ 35170245 (+)
G160647 LOC107085226,LOC102219492,LOC106934530,LOC103469014,LOC106917392 non-coding downstream 78959 35195921 ~ 35196157 (+)
G160651 NA non-coding downstream 100230 35217192 ~ 35218829 (+)
LOC120575316 NA other upstream 44466 35045717 ~ 35055656 (+)
G160423 mvp other upstream 133173 34962100 ~ 34966949 (+)
LOC120574901 NA other upstream 171647 34849589 ~ 34928475 (+)
G160318 LOC104961098 other upstream 916461 34183099 ~ 34183661 (+)
G160243 NA other upstream 932476 34167080 ~ 34167646 (+)
LOC120575321 keratin,LOC103393440,LOC106904882 other downstream 509553 35626515 ~ 35648984 (+)
G160851 LOC102784589,LOC104964221,LOC102077593,LOC101468505,LOC102290184,LOC102208295 other downstream 972658 36089620 ~ 36125552 (+)
LOC120574801 NA other downstream 1352644 36469606 ~ 36475472 (+)
utp18 utp18,LOC102793997,LOC101163956 other downstream 1986411 37103373 ~ 37119254 (+)
LOC120575390 NA other downstream 2817100 37934062 ~ 37956436 (+)

Expression


Co-expression Network