RNA id: XR_005641931.1


Basic Information

Item Value
RNA id XR_005641931.1
length 521
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id LOC120574935
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 35055948 ~ 35068196 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtcctcagttctcagctcccagtcctctagtttgagagagctggacctgagtaacaacaacctccaggattcaggagtgaagctggtGTCGGCTGGACTGAACAGTCCAAACTGTAcactggaaactctcagtctgtcaggctgtctggtCTCAGAGGAAGGCTTTACTTCTCTGGCCTtagctctgagctccaacccctcccatctgagagttctggacctgagctacaatcatccaggagactcgGGCGTGAAGCTGCTGTCAGCTGGACTTAAGGATCCAAactggagactggacactctcagGACAGACCATGGTGGACAACAGAGACTGAGACCTGGTGTGAGGAagtAGCCATCTGGTGGGTATACTTGGCATTGATCACCTTTTGAGATCCCTGGCTGTGTGCTCATGTGTTTACAATTATCAGTTGTTTGTAATCATGATGTCTGATACAAATGGGTTGCTACCCAGTTCTATTTTTAATGTAAGATTTCAAAATGAAATGGCCATtgcaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217327 lncRNA upstream 9766 35045717 ~ 35046182 (+) False LOC120575316
TU217324 lncRNA upstream 43798 35010660 ~ 35012150 (+) True G160489
TU217295 lncRNA upstream 122664 34930339 ~ 34933284 (+) False G160468
TU217296 lncRNA upstream 122844 34930339 ~ 34933104 (+) True G160468
TU217287 lncRNA upstream 155067 34900482 ~ 34900881 (+) False LOC120574901
TU217495 lncRNA downstream 48789 35116985 ~ 35119434 (+) False G160626
TU217496 lncRNA downstream 48789 35116985 ~ 35119434 (+) True G160626
TU217500 lncRNA downstream 66861 35135057 ~ 35154370 (+) True G160630
TU217505 lncRNA downstream 96397 35164593 ~ 35170245 (+) True G160631
TU217510 lncRNA downstream 96397 35164593 ~ 35170245 (+) False G160631
XM_039826034.1 mRNA upstream 292 35046111 ~ 35055656 (+) False LOC120575316
XM_039825407.1 mRNA upstream 69108 34706079 ~ 34986840 (+) True LOC120574900
XM_039825409.1 mRNA upstream 127473 34849589 ~ 34928475 (+) True LOC120574901
XM_039825415.1 mRNA upstream 208180 34837814 ~ 34847768 (+) True LOC120574908
XM_039825423.1 mRNA upstream 227383 34819773 ~ 34828565 (+) True LOC120574911
XM_039826224.1 mRNA downstream 31926 35100122 ~ 35116962 (+) True casc3
XM_039826227.1 mRNA downstream 57273 35125469 ~ 35161048 (+) True rapgefl1
XM_039826226.1 mRNA downstream 57273 35125469 ~ 35161048 (+) False rapgefl1
XM_039826228.1 mRNA downstream 112044 35180240 ~ 35185392 (+) True LOC120575436
XM_039823777.1 mRNA downstream 159040 35227236 ~ 35245200 (+) True LOC120573884
TU217328 other upstream 1429 35045717 ~ 35054519 (+) True LOC120575316
TU217208 other upstream 88999 34962100 ~ 34966949 (+) True G160423
TU217078 other upstream 872287 34183099 ~ 34183661 (+) True G160318
TU216984 other upstream 888302 34167080 ~ 34167646 (+) True G160243
unassigned_transcript_884 other upstream 1421810 33634065 ~ 33634138 (+) True trnap-agg_19
unassigned_transcript_885 other downstream 169100 35237296 ~ 35237377 (+) True trnas-uga_23
TU217642 other downstream 558319 35626515 ~ 35648984 (+) False LOC120575321
TU217802 other downstream 1021424 36089620 ~ 36125552 (+) True G160851
TU218032 other downstream 1401449 36469645 ~ 36474720 (+) False LOC120574801
TU218278 other downstream 2047627 37115823 ~ 37119251 (+) False utp18

Expression Profile