RNA id: XM_039825253.1


Basic Information

Item Value
RNA id XM_039825253.1
length 3689
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC120574800
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 36332412 ~ 36340195 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCATCACTCtgcactctcactctctgtcaTCAGAATATCTCCAGCAGCGTGAACTGGAGCTGAGAGCACGTCTGGACCAATGTCTCTGAGCTGAGTTTTGTGTGTTGCAGCATTACACAGAGAACAACAACCTCCATCTTTGATCTGATCCTGAAAACAAGAAGATGGGTGATTGGCAGAGCCGTCTgctggaggaagggagggaggcgcATAGGAAAGATTTGGAAGATTTTGTGTTTCTAATCAAAAACGACGGAAAGGCTCCAGATCTGAGCGTCAACAAGAGCATTGTGATGTTCACAGGTCTGTCATCTTCAGACAATCTGAGACAACACTACGAGAAGAGGAAAATGGAGGTGGGCGGCTCCGTTAATGACTTAATCAAACTGCATGCTGCAGACTGGATCAAAAACCTGGCGGATAAACTGGCCAGCATGGAGTCAGCTCCTGCACTGGCGGGCCTCGGAGCGCTGGCCATCGCTGTCCTCATCGACTTGGCTTCCTCGAGTCCACCTGAGGAAAGCACGAAGGACGCTCTGCGGAGCGTGTTTGCAGAGGAGAAGGCCTCCGAGGTCTGGGATCAGATCGACGAGTGCCTGAAGAGATGCGTGATGCACATCAACAACGACCACGAACTGGTGACTGACATCAGACGGATCGAGGTCCAGCTGAGCGCCGCCCTCACCAAGCTGAGGAACTCCATGGTGAGGGACGGCCACATGTCGTCTCAGGCTCTGAAGGCCTGGGTGAACGGGGCAGCCTTCCATGTCCAGATGCTGATTCACCTGGTGAGACTCGGAGGGACTCAAACCTGCGACCCTGTGGAGAGACTCCTCTCGACTTACCTGAGAGACCTGGACACGCTGTTCATCAAGCACAGGGAAATGATCGAGGGGAAGTGCAGAGTGAATGAGGTTACAAGTACTGATGTGCCATTGAGTTACACATATCTGGTGGATGATAATTTAAAGGCACACTATATGATTTATAATTATGCCTGCTTTAAAGAATACTTTGAGGCTTATTATGATAACAGATACCACGTGCAGACGAGTGACATCAAGCGTTACTTCAGCGGTGTAAGAGAGAACCTGCAGACGCTGGTTAATCAGAAAGGAAACTTTAACGTCTAAAcatccagaaaataataataataataataataataataataataataataataataataataataataataataataatattctgACATTATAACTGTTGagtttagggatgcaccgaatattcggccaccgaaaattttcggccgaaatgttgtgatgacgcaaacagaaaccgcgaccttcATGTGTgacagtacccgatccgttccacctgcatgCGCTGTGGTACAAGGATTTATGACACTACCCgatctgttcccacgctagcctccagctaagtCCACAGGTAACCTAGGTGATCTTCCAAATAGGAGGTAGAACGGTGAAAAACCTGTGACTTCACCTCGAGTGCTGTTGTATGCATAGATGAGTTTGGGCAGTGACTCTCGCCAATCTGACTTCTGCCTCTCAGTAAGCGTTCTCAGCATTTGCAGTATTGTGCTGTTTAGTTTTAGTCTCCACCTGCCCGTTGCCTTGGGGATGGTATGGTGTTGTTCTCGACCCCATCACCCCACAGTTTTTCTTCAGCTGTGCAAACAACTGGTTTTCAAAGTCCCCTCCCTGGTCATGATGAATTCTCAGGGGGAACCCAAACTTCAGCACATAATAATTAAATATCTCAAGAGTTTTGGCAGACTTCGATGTGGTGGGATAGGCCTGTGCAAAACATGTGTAATGGTCTACTATTACCAATATGTATTCATATCCACCTTTACACTTGTCTAGCTGCAAGAAGTCTATGGATACCAGCTCAAATGGTAACAACTATGGATACCAGCTCAAGTGGTAACAACTGGTGTGAGTGGAGCTGTTGTTTCTCGACATGGCTTTTTCTGTTTAATACAGGTACAGCTTTGGGTGACATAGTGGATTATCTCTCTTTGCATGTGTGGCCAGAAAAAGTGATGTTGTGCGGTCCACACCTTGATGTCCCATTTCGTTGTGCAGCTGTCTCAAAACTGTTGATTTTTTCAACTTGTTGGATTGGTGTTTTTTCCATTCTTTTCAGCAGGAGCATCGCTCGACTGGACTGAGTGGGTGGTAACAGGCTTCTGTTGTCCTGACATTCTTTTCTTGTTCTGTCTCATAGGCACATGCTGCCCAGCCAGCAATGACATGTGGGGCCCAGATGAGGGCTTCATGGGCGGCAAATGTGGGCCCCATCATGGGCTTGCACCCGGGATCCACATTGGGGCAAGTCGTGGAAGCCCAGACATACTAAaagtgggacctgtaagggtcttatgtgggtcctaactgggtaattcatgtcaaacccatttgggccccacctgcctAAAGGGCGTTTAAAATGGGCTTGCACCCGGGATCCAGccgtggatgcccagatgggttttaagtgggacctgtaagggtcttatgtgagtcctaactgggtaattcatgacagacccatttgggccccacctgcccAAAGGGGTTTAAAGTTGGTTTGCACCCACGATCCAACCGTGAATGCCCCTATGGGCTTAAAGTGGGCTCTGTAAGGATCTTATGTGGGTCCTAACTGGGCAATTCATGCAACGCCTATCTAAGCCCAACCATGCCAAATGATTCAAGGAAGCAATCTAAGAAAAACGAAGAATGAATATAAATCCAagataaataaaagacacttgACGCTTGGAACTGcaagaaatatattgttaaattgaacAAAATTGAtctaaaaatacataatacaaaattgttacatcgAACAACAAACAATCTTTaaataacaatttaaaaatatatttataaaaaatctgaaaaaaaacacctctccaaaaaatacattaatacaaaatacactcaTGGCATCTGAAGGAACTGTAAGGTGATGGGAATGGTTCAGGTGGAGTGAAGGTGTGGTGAGCAAACAGTCTCGGTCAGAAGACAGGTGGTATGGAGTGAGGAATGAAACAGGGAGAAGGCAGGGTTCAATGCAGCACCAGtgctattttattatttatcattCAGAGTGACGTGGATTCATTGCAGTTACGGTGTGCTGCAGAAAGGGATAACATAAACATTATACAATTAATGATAGTGGTCAATTAACACATattgcaaacaaacaaatgcacagGCTTTCAGATAGTACAAGAAACAATATATCCACATTGCTTATGGCACATGGCTGGCAAACAATGGCATTCAGTTAGCAGTGCACATGGTAGCATAGCAAAGACACAGTAATTCATggcataaaacaaacaaatgataaCTTGATTCACGTTAACTCCTGAAGACTCACACAGGTTGCATTGGAGTGCCGGCAGAGTGAGCAAAGAATGAGCCAAAGGGTTCACAATCAATTTATAGGCAACAGGTGAGGTGGGCGTGGTCAGGCAGCAGATAGCAAAAGCCTCCTTGAAAAAGTGGAACGGAGTTGAAAGGGGATGGGATGGCAAGAGTCTTTTCAGCGTCTGTGTGCTGGactctcctttttctctttgggCTCTTGCAGCCCTCTCCCCtcccaacacagtctcactccctactcgtcaaatgtatgacgcatggtcaaggaccctggcgtcaagtttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217860 lncRNA upstream 17108 36252921 ~ 36315304 (+) True G160906
XR_005641912.1 lncRNA upstream 59568 36272395 ~ 36272844 (+) True LOC120574820
XR_005641909.1 lncRNA upstream 60039 36271803 ~ 36272373 (+) True LOC120574817
TU217848 lncRNA upstream 65485 36206348 ~ 36266927 (+) True G160895
TU217835 lncRNA upstream 169446 36162761 ~ 36162966 (+) True G160884
XR_005641911.1 lncRNA downstream 203145 36543340 ~ 36543937 (+) True LOC120574819
TU218114 lncRNA downstream 283510 36623705 ~ 36624170 (+) True G161116
TU218122 lncRNA downstream 298968 36639163 ~ 36645741 (+) True G161124
TU218175 lncRNA downstream 466344 36806539 ~ 36806871 (+) True G161172
TU218176 lncRNA downstream 473071 36813266 ~ 36822553 (+) True G161173
XM_039826043.1 mRNA upstream 55823 36273243 ~ 36276589 (+) True LOC120575326
XM_039826042.1 mRNA upstream 88845 36240456 ~ 36243567 (+) True LOC120575325
XM_039826041.1 mRNA upstream 95111 36233804 ~ 36237301 (+) True LOC120575324
XM_039825257.1 mRNA upstream 100570 36230094 ~ 36231842 (+) True LOC120574802
XM_039825251.1 mRNA upstream 150984 36174389 ~ 36181428 (+) True thoc6
XM_039825259.1 mRNA downstream 16885 36357080 ~ 36364694 (+) True LOC120574805
XM_039825250.1 mRNA downstream 48427 36388622 ~ 36401192 (+) True LOC120574797
XM_039825249.1 mRNA downstream 48430 36388625 ~ 36401192 (+) False LOC120574797
XM_039825239.1 mRNA downstream 96166 36436361 ~ 36454329 (+) False LOC120574787
XM_039825237.1 mRNA downstream 97818 36438013 ~ 36454329 (+) True LOC120574787
TU217802 other upstream 206860 36089620 ~ 36125552 (+) True G160851
TU217642 other upstream 683428 35626515 ~ 35648984 (+) False LOC120575321
unassigned_transcript_885 other upstream 1095035 35237296 ~ 35237377 (+) True trnas-uga_23
TU217328 other upstream 1277893 35045717 ~ 35054519 (+) True LOC120575316
TU217208 other upstream 1365463 34962100 ~ 34966949 (+) True G160423
TU218032 other downstream 129450 36469645 ~ 36474720 (+) False LOC120574801
TU218278 other downstream 775628 37115823 ~ 37119251 (+) False utp18
XR_005641977.1 other downstream 1593867 37934062 ~ 37956280 (+) False LOC120575390
TU218883 other downstream 2130519 38470714 ~ 38471325 (+) True G161714
TU218981 other downstream 2430512 38770707 ~ 38772216 (+) True G161792

Expression Profile