RNA id: XM_039826037.1


Basic Information

Item Value
RNA id XM_039826037.1
length 1613
RNA type mRNA
GC content 0.52
exon number 7
gene id LOC120575321
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 35626515 ~ 35648984 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcttctctccttcccCCTGCACCGGCGAACAGACACTGCTCTTTAATCTCTCCATCATCATGACCATGGTGTACTCCTCCCGAAGCTCCATGGGCGGCGGCTTTGGCGGAGGTGGCTTCGGCGGCGGCAGCGGCTTCGGCGGTGGGGGTTttggcggcagcagcagccgaGCATCCTTCGGCGGAGGCATGAGCGCGTTCAGCATGGCAGGAGGAGCCGGAGGAAGTGGGGTCAgtATTAAGGACGCCATCCTCCTCAGAGGGACGGTCTCGCTGAGCATCGACAACGCCCAACTGGCTCAGGACGACTTCAGAATCAAGTTTGAGAATGAGCTGTCGATGCGTCAGTCTGTGGAGGCGGACATCGCCGGGCTGAAGATGGTGCTGGGAGAGCTGGGCGTCGCCAAGACCGACCTGAGCATGCAGATCGAAAGCCTGAAGGACGAGCTGGTCACCATGAAGAAGAACCACGAAGAGGACCTGATGTCCATGCGCACGCAGATGAGTGGTCAGGTGAACGTGGAGGTGGACGCCGGTCCGCAAACCGACCTCACCAAGGTCATGGAAGAGATGAGAGAACACTACGAGATGCTCGCCGCTAAGACCAACAAAGAGCTGGAGTCCTGGTTCCATTCCAAGtcGGAGATGCTCAGTAAGGAGGTGGCAACCACAGAGATGACGATCAAATCGACGGTCTCGGAGGTGAAGGAGGTGAAGAGTCAGCTTCAGGCTCTGGAGATCGAACTCCAATCACAGCACAGCATGaAAGCGTCTCTTGAAGCCACACTGGCCGACATCCAGGGCCGCTACGCCATGCAGCTGAACGGATACCAGATGATGGTGAGCGGTATGGAGGAGCAGCTGGTGCAGCTGAGGGCTGACCTGGAGCGACAGGGACAGGACTACCAGATGCTGCTGGACAtcaagaccagactggagatgGAGATCGGCGAGTACAGGAGGCTGCTGGACGGAGAGGCTGGTGGTagtggcggcggcggcggcagcgGCGGCGGatcgACAGGtttgtcctcttcctcctcctcaaccgtcatcagcagcagcaccacAGTCGTCAAAAAAGTCATCGAGGAGACCATCTGAGACCAATCATACGTCTTACCTCTGACTCGGGGGTGGAGTCAAATCTCCACTGACTCAGGAACATATAAACACACTATAAACACTCATTAAGGTATCTGATTTGGGGTCTATTCTTAATCTAAACATTGATGCATTCACACTGAATTGATTTGGGAAATCagtggcgatacccagccctagataTGACACCTCTGACATGAATCAAGGTTGCCTGAATAATGGCTGTAAAAGATCAGtgactacatttacatgcacataatattccagtttttgTCCTCATTCTGAAAAAGACAGTGTCCCTACCAAGCTGTTTCCACGGCTATAGAAAGtcaatattccactaatattcctgtttacatgacctgtgtCAAATTtgtggaatattagtgtgcatgtaaacataatcAATGAGTCAAAGATTGTCATTGTGTGATAGTTTGGGTCAGGGACAACTTTACTTCCAACAAAGCTTCTGTCTTCTTCAAGGAATAAAACTCAACTAAACTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217630 lncRNA upstream 149452 35469539 ~ 35477069 (+) True G160700
XR_005641907.1 lncRNA upstream 284707 35341154 ~ 35341814 (+) True LOC120574814
TU217555 lncRNA upstream 407692 35217192 ~ 35218829 (+) True G160651
TU217546 lncRNA upstream 430364 35195921 ~ 35196157 (+) True G160647
TU217524 lncRNA upstream 456276 35164593 ~ 35170245 (+) False G160631
TU217620 lncRNA downstream 31578 35666577 ~ 35691540 (+) True G160691
TU217657 lncRNA downstream 83050 35718049 ~ 35718362 (+) True G160722
TU217663 lncRNA downstream 103234 35738233 ~ 35738663 (+) True G160728
TU217770 lncRNA downstream 128376 35763375 ~ 35763865 (+) True G160820
TU217786 lncRNA downstream 187138 35822137 ~ 35828076 (+) True G160835
XM_039825243.1 mRNA upstream 33381 35586779 ~ 35593140 (+) True LOC120574792
XM_039825248.1 mRNA upstream 69148 35540809 ~ 35557373 (+) True LOC120574796
XM_039825247.1 mRNA upstream 91861 35530137 ~ 35534660 (+) True LOC120574795
XM_039826036.1 mRNA upstream 194362 35431247 ~ 35432159 (+) True LOC120575320
XM_039825226.1 mRNA upstream 327737 35291676 ~ 35298784 (+) True LOC120574781
XM_039825258.1 mRNA downstream 408145 36043144 ~ 36088699 (+) True stx1b
XM_039825251.1 mRNA downstream 539390 36174389 ~ 36181428 (+) True thoc6
XM_039825257.1 mRNA downstream 595095 36230094 ~ 36231842 (+) True LOC120574802
XM_039826041.1 mRNA downstream 598805 36233804 ~ 36237301 (+) True LOC120575324
XM_039826042.1 mRNA downstream 605457 36240456 ~ 36243567 (+) True LOC120575325
unassigned_transcript_885 other upstream 389144 35237296 ~ 35237377 (+) True trnas-uga_23
TU217328 other upstream 572002 35045717 ~ 35054519 (+) True LOC120575316
TU217208 other upstream 659572 34962100 ~ 34966949 (+) True G160423
TU217078 other upstream 1442860 34183099 ~ 34183661 (+) True G160318
TU216984 other upstream 1458875 34167080 ~ 34167646 (+) True G160243
TU217802 other downstream 454621 36089620 ~ 36125552 (+) True G160851
TU218032 other downstream 834646 36469645 ~ 36474720 (+) False LOC120574801
TU218278 other downstream 1480824 37115823 ~ 37119251 (+) False utp18
XR_005641977.1 other downstream 2299063 37934062 ~ 37956280 (+) False LOC120575390
TU218883 other downstream 2835715 38470714 ~ 38471325 (+) True G161714

Expression Profile