RNA id: TU217555


Basic Information

Item Value
RNA id TU217555
length 298
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G160651
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 35217192 ~ 35218829 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGTTGTCGGCGCTAGCACGCCGAGCTAGCTAACAGCAGGATGAGAAAATAACTCAGACAAGACCAGAGGtggaggactgcatttttgtgcacaatGATTGGAGTACCGACCGCAGGATTGTTGCCCAGCacggctcacctgacctggagccctgtcggtaatatacaggccattttatttactacgaaaacagcacactgccgtctacatagcccccgatgctaacgttagcacaagtttggctcactgctaaccatagtgaacaaactgcagcgcgatCACaaacacacatacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217546 lncRNA upstream 21035 35195921 ~ 35196157 (+) True G160647
TU217505 lncRNA upstream 46947 35164593 ~ 35170245 (+) True G160631
TU217510 lncRNA upstream 46947 35164593 ~ 35170245 (+) False G160631
TU217524 lncRNA upstream 46947 35164593 ~ 35170245 (+) False G160631
TU217500 lncRNA upstream 62822 35135057 ~ 35154370 (+) True G160630
XR_005641907.1 lncRNA downstream 122325 35341154 ~ 35341814 (+) True LOC120574814
TU217630 lncRNA downstream 250710 35469539 ~ 35477069 (+) True G160700
TU217620 lncRNA downstream 447748 35666577 ~ 35691540 (+) True G160691
TU217657 lncRNA downstream 499220 35718049 ~ 35718362 (+) True G160722
TU217663 lncRNA downstream 519404 35738233 ~ 35738663 (+) True G160728
XM_039826228.1 mRNA upstream 31800 35180240 ~ 35185392 (+) True LOC120575436
XM_039826227.1 mRNA upstream 56144 35125469 ~ 35161048 (+) True rapgefl1
XM_039826226.1 mRNA upstream 56144 35125469 ~ 35161048 (+) False rapgefl1
XM_039826224.1 mRNA upstream 100230 35100122 ~ 35116962 (+) True casc3
XM_039826034.1 mRNA upstream 161536 35046111 ~ 35055656 (+) False LOC120575316
XM_039823777.1 mRNA downstream 8407 35227236 ~ 35245200 (+) True LOC120573884
XM_039825226.1 mRNA downstream 72847 35291676 ~ 35298784 (+) True LOC120574781
XM_039826036.1 mRNA downstream 212418 35431247 ~ 35432159 (+) True LOC120575320
XM_039825247.1 mRNA downstream 311308 35530137 ~ 35534660 (+) True LOC120574795
XM_039825248.1 mRNA downstream 321980 35540809 ~ 35557373 (+) True LOC120574796
TU217328 other upstream 162673 35045717 ~ 35054519 (+) True LOC120575316
TU217208 other upstream 250243 34962100 ~ 34966949 (+) True G160423
TU217078 other upstream 1033531 34183099 ~ 34183661 (+) True G160318
TU216984 other upstream 1049546 34167080 ~ 34167646 (+) True G160243
unassigned_transcript_884 other upstream 1583054 33634065 ~ 33634138 (+) True trnap-agg_19
unassigned_transcript_885 other downstream 18467 35237296 ~ 35237377 (+) True trnas-uga_23
TU217642 other downstream 407686 35626515 ~ 35648984 (+) False LOC120575321
TU217802 other downstream 870791 36089620 ~ 36125552 (+) True G160851
TU218032 other downstream 1250816 36469645 ~ 36474720 (+) False LOC120574801
TU218278 other downstream 1896994 37115823 ~ 37119251 (+) False utp18

Expression Profile