RNA id: TU217657


Basic Information

Item Value
RNA id TU217657
length 314
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G160722
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 35718049 ~ 35718362 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAATagtctgttttttgtatttcaagagcgaATTGCtgcacaatatgaatacagattggtcacttattttgttgtataatcacaatattacacttaAGGAGGTCTATACTTCAGTGATGCGCTTTCGGACCTGGAAATTAAACCCTCTTATTTAATGTGGCTTAAACAAACGTTAAACAGTGATGCAGTTTTAAAAGTTTACAGACATGTCTTTTCTGATTGAGTATCAGCTGTGACCCGAgccgagacacacccaccaaacaagagaaaacatatctcaaccatagacttaatatttacagtctatgatctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217620 lncRNA upstream 26509 35666577 ~ 35691540 (+) True G160691
TU217630 lncRNA upstream 240980 35469539 ~ 35477069 (+) True G160700
XR_005641907.1 lncRNA upstream 376235 35341154 ~ 35341814 (+) True LOC120574814
TU217555 lncRNA upstream 499220 35217192 ~ 35218829 (+) True G160651
TU217546 lncRNA upstream 521892 35195921 ~ 35196157 (+) True G160647
TU217663 lncRNA downstream 19871 35738233 ~ 35738663 (+) True G160728
TU217770 lncRNA downstream 45013 35763375 ~ 35763865 (+) True G160820
TU217786 lncRNA downstream 103775 35822137 ~ 35828076 (+) True G160835
TU217817 lncRNA downstream 292485 36010847 ~ 36011265 (+) True G160866
TU217819 lncRNA downstream 334912 36053274 ~ 36073113 (+) True G160868
XM_039826037.1 mRNA upstream 83050 35626521 ~ 35634999 (+) True LOC120575321
XM_039825243.1 mRNA upstream 124909 35586779 ~ 35593140 (+) True LOC120574792
XM_039825248.1 mRNA upstream 160676 35540809 ~ 35557373 (+) True LOC120574796
XM_039825247.1 mRNA upstream 183389 35530137 ~ 35534660 (+) True LOC120574795
XM_039826036.1 mRNA upstream 285890 35431247 ~ 35432159 (+) True LOC120575320
XM_039825258.1 mRNA downstream 324782 36043144 ~ 36088699 (+) True stx1b
XM_039825251.1 mRNA downstream 456027 36174389 ~ 36181428 (+) True thoc6
XM_039825257.1 mRNA downstream 511732 36230094 ~ 36231842 (+) True LOC120574802
XM_039826041.1 mRNA downstream 515442 36233804 ~ 36237301 (+) True LOC120575324
XM_039826042.1 mRNA downstream 522094 36240456 ~ 36243567 (+) True LOC120575325
TU217642 other upstream 69065 35626515 ~ 35648984 (+) False LOC120575321
unassigned_transcript_885 other upstream 480672 35237296 ~ 35237377 (+) True trnas-uga_23
TU217328 other upstream 663530 35045717 ~ 35054519 (+) True LOC120575316
TU217208 other upstream 751100 34962100 ~ 34966949 (+) True G160423
TU217078 other upstream 1534388 34183099 ~ 34183661 (+) True G160318
TU217802 other downstream 371258 36089620 ~ 36125552 (+) True G160851
TU218032 other downstream 751283 36469645 ~ 36474720 (+) False LOC120574801
TU218278 other downstream 1397461 37115823 ~ 37119251 (+) False utp18
XR_005641977.1 other downstream 2215700 37934062 ~ 37956280 (+) False LOC120575390
TU218883 other downstream 2752352 38470714 ~ 38471325 (+) True G161714

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000320_01756997_01757219.mRNA True 4820 mRNA 0.42 2 CI01000320 1752715 ~ 1757604 (+)