RNA id: XM_039825247.1


Basic Information

Item Value
RNA id XM_039825247.1
length 1365
RNA type mRNA
GC content 0.58
exon number 7
gene id LOC120574795
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 35530137 ~ 35534660 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGCTCTTCACTCTCCGCTCAGAGCCGACGACCAGCCGACCCTCAGCCATGACCTCCTTCTCCAGCCGCAACAGCCTCATGTCCTCCTCCTCCCGCCGTGTCGGCAGCATGGGGGCCGGCAGCGTGTACGGAGGAGCCGGAGGGACGGGAATCCGTGTCTCCAAggcctccttctcctcctctgccgCCGGTGCTGGCGGCGCCTTCAGCCTGTCCGACGCCGTCGACATCTCCGACAACAAGAAAGTGGCCATGCAGAACCTCAACGACCGCCTGGCGTCCTACCTGGACAAGGTGCGCAACCTGGAGAGGGCCAACGCAGACCTGGAGCTGAAGATCAGACAGTTCCTGGAGAACAAGACCAAACCTGAGGGCCACGACTGGACCGCGTACTACGTCCGCATCAAAGACCTGCAGGACCAGATCAACTCCGCTGCTTGTGGAAACGCCGGCCTTGTCCTCGCCATCGACAATGCCCGGCTGGCCAGCGACGACTTTAAAGCCAAGTTTGAGAATGAGCTGACCATGCGTCAGTCGGTGGAGGCCGACATCGCCGGGCTGAAGAGAGTCCTGCAGGAAGTGACTATGGGAAGATCCGACCTGGAGATGCAGATCGAGGGTCTAAAGGACGAACTAATCTTCCTCAAGAAAAACCACGAGGAGGACCTGCTGGCCCTGCGAGCCCAGGTGGGAGGCCAGGTGAACGTGGAGGTGGACGCCGCTCCACAGCATGACCTGTCCGCCGTCATGGCCGGAATCAGAGAACACTACGAGACCATCGCCCACAAGAACCGCAATGAGCTGGAGTCCTGGTTCCAGGCCAAGTCGCTCGAGCTGAACAAAGAGGTGGCTGTGAGCACTGAGACTCTGCAGACGTCCAAGACTGAGATCTCAGAGGTCAGACGAACTCTTCAGTCTTTGGAGATCAAACTGCAGTCTGCGATCAGCAAGAATGGAGCTGTGGAGGTCAGACTGGCTGAGACCAAGAGCCGCTATGCCAACATGCTGGTAGGTTACCAGAGGCAGGTGGAGGGTCTGGAGGAGCAGCTGTCTCACCTCAGGGCTGACCTGGATAGCCAGAGGGCCATGTATGCCGAGCTGCTGGACAtcaagaccagactggagatgGAGATCGCCGAGTACAGGAGGCTGCTGGACGGAGAGAGCACTACCAAGACTGCCACCACCACCAAGACCTCCTCCACCTCTAAGACAACGAAGGTGATCGCCATCACGGAGGAAGTGGACGAACATGGAAACGTGATCAGCAGCAAATAGATCAGAATGAAACCAGAACCAGATGATGTAACTTGTAAACTGAGTCTGTCTCAGCTTCTTTAATAAAGACAAAGTCTGACATTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217630 lncRNA upstream 53068 35469539 ~ 35477069 (+) True G160700
XR_005641907.1 lncRNA upstream 188323 35341154 ~ 35341814 (+) True LOC120574814
TU217555 lncRNA upstream 311308 35217192 ~ 35218829 (+) True G160651
TU217546 lncRNA upstream 333980 35195921 ~ 35196157 (+) True G160647
TU217510 lncRNA upstream 359892 35164593 ~ 35170245 (+) False G160631
TU217620 lncRNA downstream 131917 35666577 ~ 35691540 (+) True G160691
TU217657 lncRNA downstream 183389 35718049 ~ 35718362 (+) True G160722
TU217663 lncRNA downstream 203573 35738233 ~ 35738663 (+) True G160728
TU217770 lncRNA downstream 228715 35763375 ~ 35763865 (+) True G160820
TU217786 lncRNA downstream 287477 35822137 ~ 35828076 (+) True G160835
XM_039826036.1 mRNA upstream 97978 35431247 ~ 35432159 (+) True LOC120575320
XM_039825226.1 mRNA upstream 231353 35291676 ~ 35298784 (+) True LOC120574781
XM_039823777.1 mRNA upstream 284937 35227236 ~ 35245200 (+) True LOC120573884
XM_039826228.1 mRNA upstream 344745 35180240 ~ 35185392 (+) True LOC120575436
XM_039826227.1 mRNA upstream 369089 35125469 ~ 35161048 (+) True rapgefl1
XM_039825248.1 mRNA downstream 6149 35540809 ~ 35557373 (+) True LOC120574796
XM_039825243.1 mRNA downstream 52119 35586779 ~ 35593140 (+) True LOC120574792
XM_039826037.1 mRNA downstream 91861 35626521 ~ 35634999 (+) True LOC120575321
XM_039825258.1 mRNA downstream 508484 36043144 ~ 36088699 (+) True stx1b
XM_039825251.1 mRNA downstream 639729 36174389 ~ 36181428 (+) True thoc6
unassigned_transcript_885 other upstream 292760 35237296 ~ 35237377 (+) True trnas-uga_23
TU217328 other upstream 475618 35045717 ~ 35054519 (+) True LOC120575316
TU217208 other upstream 563188 34962100 ~ 34966949 (+) True G160423
TU217078 other upstream 1346476 34183099 ~ 34183661 (+) True G160318
TU216984 other upstream 1362491 34167080 ~ 34167646 (+) True G160243
TU217642 other downstream 91855 35626515 ~ 35648984 (+) False LOC120575321
TU217802 other downstream 554960 36089620 ~ 36125552 (+) True G160851
TU218032 other downstream 934985 36469645 ~ 36474720 (+) False LOC120574801
TU218278 other downstream 1581163 37115823 ~ 37119251 (+) False utp18
XR_005641977.1 other downstream 2399402 37934062 ~ 37956280 (+) False LOC120575390

Expression Profile