RNA id: XM_039825255.1


Basic Information

Item Value
RNA id XM_039825255.1
length 1182
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC120574801
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 36469606 ~ 36475472 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCATCACTCtgcactctcactctctgtcaTCAGAATATCTCCAGCAGCGTGAACTGGAGCTGAGAGCACGTCTGGACCAATGTCTCTGAGCTGAGTTTTGTGTGTTGCAGCATTACACAGAGAACAACAACCTCCATCTTTGATCTGATCCTGAAAACAAGAAGATGGGTGATTTGCAGAGCCGTCTgctggaggaagggagggaggcgcATAGGAAAGATTTGGAAGATTTTGTGTTTCTAATCAAAAACGACGGAAAGGCTCCAGATCTGAGAGTCAACAAGAGCATTGTGATGTTCACAGGTCTGTCGTCTTCAGACAATCTGAGACAACACTACGAGAAGAGGAAAATGGAGGTGGGCGGCTCCGTTAATGACTTAATCAAACTGCATGCTGCAGACTGGATCAAAAACCTGGCGGATAAACTGGCCAGCATGGAGTCAGCTCCTGCACTGGCGGGCCTCGGAGCGCTGGCCATCGCTGTCCTCATCGACTTGGCTTCCTCGAGTCCACCTGAGGAAAGCACAAAGGACGCTCTGCGGGGCGTGTTTGCCGAGGAGAAGGCCTCCGAGGTCTGGGATCAGATCGACGAGTGCCTGAAGAGATGCGTGATGCACATCAACAACGACCCCGAACTGGTGACTGACATCAGACGGATCGAGGTCCAGCTGAGCACCGCCCTCACCAAGCTGAAGAACTCCATGGTGAGGCACGGCCACATGTCGTCTCAGGCTCTGAAGGCCTGGGTGAACGGGGCAGCCTTCCACATCCAGATGCTGATTCACCTGGTGAGACTCGGAGGGACTCAAACCTGCGACCCTGTGGAGAGACTCCTCTCGACTTACCTGAGAGACCTGGACACGCTGTTCATCAAGCACAGGGAAATGATCGAGGGGAAGTGCAGAGTGAATGAGGTTACAAGTACTGATGTGCCATTGAGTTACACATATCTGGTGGATGATGATTTAAAGGCACACTATATGATTTATAATTATGCCTGCTTTAAAGAATACTTTGAGGCTTATTATGATAACAGATACAGCGTGCAGACAAGTGACATCAAGCGTTACTTCAGCGGCATAAGAAACAACCTACAGACGCTGGTTAATCAAAAAGGATACTTTAACATCTAAAcatccagaaaataataataataatattctgACATTATAACTGTTGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217860 lncRNA upstream 154302 36252921 ~ 36315304 (+) True G160906
XR_005641912.1 lncRNA upstream 196762 36272395 ~ 36272844 (+) True LOC120574820
XR_005641909.1 lncRNA upstream 197233 36271803 ~ 36272373 (+) True LOC120574817
TU217848 lncRNA upstream 202679 36206348 ~ 36266927 (+) True G160895
TU217835 lncRNA upstream 306640 36162761 ~ 36162966 (+) True G160884
XR_005641911.1 lncRNA downstream 67868 36543340 ~ 36543937 (+) True LOC120574819
TU218114 lncRNA downstream 148233 36623705 ~ 36624170 (+) True G161116
TU218122 lncRNA downstream 163691 36639163 ~ 36645741 (+) True G161124
TU218175 lncRNA downstream 331067 36806539 ~ 36806871 (+) True G161172
TU218176 lncRNA downstream 337794 36813266 ~ 36822553 (+) True G161173
XM_039825239.1 mRNA upstream 15277 36436361 ~ 36454329 (+) False LOC120574787
XM_039825237.1 mRNA upstream 15277 36438013 ~ 36454329 (+) True LOC120574787
XM_039825250.1 mRNA upstream 68414 36388622 ~ 36401192 (+) True LOC120574797
XM_039825249.1 mRNA upstream 68414 36388625 ~ 36401192 (+) False LOC120574797
XM_039825259.1 mRNA upstream 104912 36357080 ~ 36364694 (+) True LOC120574805
XM_039826154.1 mRNA downstream 278897 36754369 ~ 36758115 (+) True LOC120575385
XM_039823658.1 mRNA downstream 470770 36946242 ~ 36949521 (+) True LOC120573814
XM_039825037.1 mRNA downstream 563385 37038857 ~ 37057327 (+) True LOC120574686
XM_039826091.1 mRNA downstream 627901 37103373 ~ 37119254 (+) True utp18
XM_039823683.1 mRNA downstream 644986 37120458 ~ 37137811 (+) False LOC120573828
TU217802 other upstream 344054 36089620 ~ 36125552 (+) True G160851
TU217642 other upstream 820622 35626515 ~ 35648984 (+) False LOC120575321
unassigned_transcript_885 other upstream 1232229 35237296 ~ 35237377 (+) True trnas-uga_23
TU217328 other upstream 1415087 35045717 ~ 35054519 (+) True LOC120575316
TU217208 other upstream 1502657 34962100 ~ 34966949 (+) True G160423
TU218278 other downstream 640351 37115823 ~ 37119251 (+) False utp18
XR_005641977.1 other downstream 1458590 37934062 ~ 37956280 (+) False LOC120575390
TU218883 other downstream 1995242 38470714 ~ 38471325 (+) True G161714
TU218981 other downstream 2295235 38770707 ~ 38772216 (+) True G161792
TU218982 other downstream 2307591 38783063 ~ 38784044 (+) False LOC120573912

Expression Profile