RNA id: XM_039826091.1


Basic Information

Item Value
RNA id XM_039826091.1
length 2142
RNA type mRNA
GC content 0.55
exon number 16
gene id utp18
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 37103373 ~ 37119254 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGTCCCGGAAACACATGAAGAAAAACACTGAACTCCAGCACATGTGGAACCAGAAGCTGCTGAACGCGGATTAATAACAGAAATATTAATAGTTTATTCCTTCATGTCTGTCCGCTGAGGGCTTAAATCAGTAGTTTTCTGTTGGGAGTTTGGTTCGGGCAACATGGAGGACGTGAACGTTATCAAGCTGCCGGCGACGGAGGAGAGAAAAGCGGCCAAGAAACGGACCCGAGCACCCAAGTTTAAcccggaggaagaggaggagaaacgGCGGAGAAACGTGCAGTGTGTGTCGGTGCTGGGAGAGGAAGACAGCTCGGTGAAGCTGCTGGAGGAGCTGGTGTTCGGGGCGGAGGAACAGCTGCTGGACAGACTCGGCGAGGAGGACGCGGCGGAGCAGACTGGAAGCTTATTGGTGGAGGACGGAGACCATGAGTCGGGGGAATCAGAGGCCGAGGACGCGGCTCGCCTGCAGCGCCGGCCAATCAGAGCGGCCGCCTGGGTGGACGAGGATGACGATCTGGAGGAAGAggtgGACATGAAGCACCGTTACCGTAGAGACCTGATCAGAGGAGACCCCGAGTCCACCATGACCAAAGAGAAGCTACAGCAGAGGATGAGAGAGCAgtttcAGAAGGCGATGGGAGGAACTCCATCGTGGGCAGAGAGCAgcgtgaagaagaaaaagaagaagaagaaagccgatgatgatgatgatgatgatgatgatgaggatgatgaggatgaagagCTGCTGAGGAGGACAGGAAACTTTGTGGGGTCTTCAGACAGTCTGCCCAGCGGCGTCCTGAGGatGAAGAAATGTCTCCATGCCAACAGTGCGCGTCCATCGGAGGACAGACTGACCACTGTCCAGTTTCACCCCTCCGCTCAGGTCGTCATGACAGCCGGCCTCGACCAATCGGTGTCCCTCTTCCAGGTGGATGGGGAGACCAACCCTAAGATCCAGAGTATCCACCTGGTTCCGGTGTGACGAGCCCAGTTCAGCGTTTGACCAAGGAGGCTGGTGACCACCACCAGCCTGAAGAACAAGATATTCTACCTCCATGCGCAGGTAGGAGGGCACATCCCTCCCACCAATACTGTTAAGGGAAGGCTGAATGAAGCCAGGGTGAAGGAGTTCTCTGTTTGTCCTGAAGGAGGCACTCTGCTGCTCACTGGGACCAACGGATACCTGCACCTCCTCACACTCAAGactAAGGAGGTGGTCAGCAGTCTGAAGATAAACGGTGATGTCAGCGGCGTCGCCTTCTCTCCTGACGGCAGCAAAGTGTTCGCCAACTCTGaggacGGCGAGGTGTATGTGTGGGACCTGCGTTCCAGCCGCTGTGTGAACAGGTTTCCAGACGACGGCTGTGTGAAGGGAACGTCCATCGCTGCCTCGCGGAACGGACAGTATCTCGCCTGCGGCTCGGAGTCGGGCGTGGTCAACATCTACTCCCAGGAGGCGTGTCTTAACTCGGCCAATCCCAGGCCTCTGAGAGCGGTGATGAACCTGCTGACCTCGGCCACCGCTCTGACCTTTAACCCCTCCTCTGAGATCCTCGCCATCGCGTCCCGGGCCGACGACGAGGCAGTACGCCTGGTCCACCTGCCGAGTCTCTCCGTCTTCTCCAACTTCCCCGTCTCCAAGAGGAAGATTGTTTACCGGGCCAGCTGCCTGGACTTCTCCCCGCACAGCGGCTTCTTCTCATTGGCCAACAACAAAGGACACGCCCCTCTCTTCAGgTTGCTGCATTACAAAGACTTCTGAGGAGGGTGGATCATGAGGAGTGTCAGGTCCGACCAgtcctctgtgttttttttctcccgttTTTATTCCCCGTCAGCGCTGCCCACTTCCATCGCGTCTGGATCCTCACACGTCACCTCTTTGAACGCAGCAGGGGGGGGAATATTCTCACCTTTCGCTTCAAGAAATAATAAACGTCTGCTTAGGGACGATGTGTCAACACAAGGTTGAAGGGATTTGTAGTTCTTGTGGCTAAAACGTGAAAATAACTGTGTGGAGTTTGGCTCAGACGGCACAGAGAGGCAGTTTGTAGAAACTTGTGGAGCGTTGTGATGATTTGTTATTATCTGTATGAAGTGATTGTATAAAAAGACACTTTAACAAAACA

Function

GO: NA

KEGG:

id description
K14553 UTP18; U3 small nucleolar RNA-associated protein 18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218265 lncRNA upstream 112691 36986283 ~ 36990682 (+) True LOC120573858
XR_005641787.1 lncRNA upstream 115323 36986283 ~ 36988050 (+) False LOC120573858
XR_005641781.1 lncRNA upstream 157141 36945209 ~ 36946232 (+) True LOC120573813
TU218245 lncRNA upstream 164969 36936181 ~ 36938404 (+) True G161226
TU218196 lncRNA upstream 203056 36888777 ~ 36900317 (+) True G161190
TU218290 lncRNA downstream 54174 37173428 ~ 37173635 (+) True G161264
TU218302 lncRNA downstream 89669 37208923 ~ 37209402 (+) False G161265
TU218303 lncRNA downstream 89669 37208923 ~ 37209907 (+) False G161265
TU218305 lncRNA downstream 89669 37208923 ~ 37209907 (+) True G161265
TU218292 lncRNA downstream 90213 37209467 ~ 37209907 (+) False G161265
XM_039825037.1 mRNA upstream 46046 37038857 ~ 37057327 (+) True LOC120574686
XM_039823658.1 mRNA upstream 153852 36946242 ~ 36949521 (+) True LOC120573814
XM_039826154.1 mRNA upstream 345258 36754369 ~ 36758115 (+) True LOC120575385
XM_039825255.1 mRNA upstream 627901 36469606 ~ 36475472 (+) True LOC120574801
XM_039825254.1 mRNA upstream 627901 36469606 ~ 36475472 (+) False LOC120574801
XM_039823683.1 mRNA downstream 1204 37120458 ~ 37137811 (+) False LOC120573828
XM_039823686.1 mRNA downstream 1204 37120458 ~ 37137811 (+) False LOC120573828
XM_039823684.1 mRNA downstream 1212 37120466 ~ 37137811 (+) True LOC120573828
XM_039823685.1 mRNA downstream 1229 37120483 ~ 37137811 (+) False LOC120573828
XM_039824735.1 mRNA downstream 27591 37146845 ~ 37167776 (+) True zgc:158376
TU218032 other upstream 628653 36469645 ~ 36474720 (+) False LOC120574801
TU217802 other upstream 977821 36089620 ~ 36125552 (+) True G160851
TU217642 other upstream 1454389 35626515 ~ 35648984 (+) False LOC120575321
unassigned_transcript_885 other upstream 1865996 35237296 ~ 35237377 (+) True trnas-uga_23
TU217328 other upstream 2048854 35045717 ~ 35054519 (+) True LOC120575316
XR_005641977.1 other downstream 814808 37934062 ~ 37956280 (+) False LOC120575390
TU218883 other downstream 1351460 38470714 ~ 38471325 (+) True G161714
TU218981 other downstream 1651453 38770707 ~ 38772216 (+) True G161792
TU218982 other downstream 1663809 38783063 ~ 38784044 (+) False LOC120573912

Expression Profile