RNA id: XM_039823686.1


Basic Information

Item Value
RNA id XM_039823686.1
length 2452
RNA type mRNA
GC content 0.54
exon number 12
gene id LOC120573828
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 37120458 ~ 37137811 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAACCATGTTAAACAAGCATCTCAACTCACGTGGGAGCTCCTTGCACCTGTGAGTCCCCGCCCACCCCTGACGTCACAGACCAACCTGAGTTTCAGGCTCCGACAGAAAAGAGtcccagagaagaagaaagcagcagggcgATGATGGCAGAGGCGGCAACCCCAGATCTGTTCTCAGAGCAGGAGTTAACctgctccatctgtctggatctgtTCAACCAGCCGGTCTCCACTCCCTGTGGACACAACTTCTGTCAgGCGTGTATTGGAGGTTACTGGGCGTCTGGCGCGGCATGCACCTGTCCTCTCTGCAAGCGCCAGTTCGATGAACGCCCTCAGCTCAGCGTCAACAAAGTTTTCGCTCTCATCGCCGAGAAATTCAAACTGATCCGCTACGGCGCCGCGGGGTTACCCTCGTCGGTCGGGAACGGGACGCCGGCGCTCGCGGTGACCCCAGACGATCCGTCCGTGGTGGCGGTGGCACCCGGTGATGACGTGGTGTGGTGTGACGTGTGCACGGGCCTGAAGCAGCCGGCGGTCAGCTCCTGCCTCACCTGCACCGCCTCGTACTGCTCACTGCACCTGCAGCCGCACCACAGCACGCCGTTCTACGCCAAACACCCGCTGATGTCACCGCAGGACGCGCTGCGGGGGCGCACCTGCCGCGTGCACCGCCGCCTGCTGGAGGTGTACTGTCGGACATGTGAGCGCTGCATCTGTGCCCTCTGTGTGCTGGATGAACATCGGATCCACAAAACGGTCTCGGTGCAGACGGAGAGACTCACCAAacagAAGCAGGTGGCGAGGACGGAGCAGGAGATCCTGAACCGGATCGGACAGAAAGAGATTCATGTTACTCAGCTGAAGAGGAAACTGGATGCAGTCAAGAGTCTGGACTGTGCGGCGGCCCCCCTGGCCGAGGACCAGGATGCTGATCTGGATGAAGAGTTCTCAGAGTTTTCTCTCAGCTTCCAGCTGGATGACGTCAAGAACTCACTGGCCGACATCAGGGACAGGATGGACCTCATCAGGATGGGGGGGGGACCAACCCCCAGGGGGGGCTCAGtgtccAATGAGCTGACGGCAGCAGAGAGCATGCTCAGTCTGAGAGGAAGCTCGGCCAATCTGAGGAAGAGTCAGTGGTCTCTGAGAGATATGAAGAGGATGAAACATGTCTCAGGACATAAGAAGGTGCGAGTCTACATGGAGGACGTGGCGTTGAACCCCGTGACGGCGTACCCCTTCCTGATCCTGTCCTCAGACAGGAAGCAGGTGAAGCGCGGCGAGACGCTGCAGTTCTTCCGGAGCAGCCCGCAGCGCTACGATGTCTGGTCCTGCGTCCTCGCCAAGGAGGGCTACGCCACTGGACGCCACTACTGGGAGGTGTTTATCGGCGAGAGCAGGGACTGGAAGCTGGGCGTGGTCACGGAGACGGCGAGCAGGAAAGGGCTGTTTGACATGAGTCCGTCTAACGGGTACTACGCCCTCTGGTGGAGCGGAGGCCAGCTGAGAGCGCTCACGGCCCCCCCCCTCACTAAGGTGAAGAGCCCCCCGAGGCTGCGTCAGGTGGGCGTGTTCCTGGACGTGGACGAGGGTCACGTGACCTTTTATAACGCCAAGTCTGGCTCGGAGATCTACAGCTTCAGCGGAACCGCAGAGTTCACCGAGAGGATGTTTCCTCTGCTGGGGACCGGGGACAAAGAGACGCCGCTGGTGCTGATGACCACGCAGCCCGATGcctgaggggggagggggggataaTGGGGGAAGAAAAGAGGGGAACACCTGGACGGTTCTTGACATCAAAAAGTGCCAGAAAACATCGGAACAAATGTACAAGATGTTTGAGAAAAAGGCTCACAAGTGCAAAAAAAACGTTAAAGAAAGcaccaaaaacatcaaaaggggggggggggcagagatagaggggaaagaaagaggagtttttttgttttttgttgacatttatgttgcttttttttcaaaatgtttgtagcTTTTGTCTTGACTTTTTTGTCGCTTGATTTGAcattttgttgctattttctaAAATCTCTAGACGCATCGGTTAGTTTGGACGTCAGccgaaaaacaaacaataaccaGCAAAACCTAAAgaaaagggaggaaaagaagTTGAGAAATGCCTTAatataaacctgaaaataagtTGTTATGCTGCTGGAAGAAACCACTGgtttgggagggggggggattaAGAAATAAATATAGGAGATTTAATAAACAGAAGTTGTGTAATAAGTAAATTATTAAAACTTGTGAAGAAGTGTTTAAACATGTCAGAATATGaaggaaatgtttgtttttattagacATATCACCTTTGATGGCTCCGCCCCCTTTACCTTTCAGCCAATGGCGAGGCTCCGTTGATGTTCAAACTGTTAAATAGGATTAAATAAAGACTCCTTTTCATCTCTGTGGACTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218265 lncRNA upstream 129776 36986283 ~ 36990682 (+) True LOC120573858
XR_005641787.1 lncRNA upstream 132408 36986283 ~ 36988050 (+) False LOC120573858
XR_005641781.1 lncRNA upstream 174226 36945209 ~ 36946232 (+) True LOC120573813
TU218245 lncRNA upstream 182054 36936181 ~ 36938404 (+) True G161226
TU218196 lncRNA upstream 220141 36888777 ~ 36900317 (+) True G161190
TU218290 lncRNA downstream 35617 37173428 ~ 37173635 (+) True G161264
TU218302 lncRNA downstream 71112 37208923 ~ 37209402 (+) False G161265
TU218303 lncRNA downstream 71112 37208923 ~ 37209907 (+) False G161265
TU218305 lncRNA downstream 71112 37208923 ~ 37209907 (+) True G161265
TU218292 lncRNA downstream 71656 37209467 ~ 37209907 (+) False G161265
XM_039826091.1 mRNA upstream 1204 37103373 ~ 37119254 (+) True utp18
XM_039825037.1 mRNA upstream 63131 37038857 ~ 37057327 (+) True LOC120574686
XM_039823658.1 mRNA upstream 170937 36946242 ~ 36949521 (+) True LOC120573814
XM_039826154.1 mRNA upstream 362343 36754369 ~ 36758115 (+) True LOC120575385
XM_039825254.1 mRNA upstream 644986 36469606 ~ 36475472 (+) False LOC120574801
XM_039824735.1 mRNA downstream 9034 37146845 ~ 37167776 (+) True zgc:158376
XM_039824737.1 mRNA downstream 39264 37177075 ~ 37193351 (+) True kpnb1
XM_039824738.1 mRNA downstream 39264 37177075 ~ 37193351 (+) False kpnb1
XM_039826049.1 mRNA downstream 56166 37193977 ~ 37224889 (+) True LOC120575332
XM_039826052.1 mRNA downstream 632430 37770241 ~ 37779794 (+) True LOC120575334
TU218278 other upstream 1207 37115823 ~ 37119251 (+) False utp18
TU218032 other upstream 645738 36469645 ~ 36474720 (+) False LOC120574801
TU217802 other upstream 994906 36089620 ~ 36125552 (+) True G160851
TU217642 other upstream 1471474 35626515 ~ 35648984 (+) False LOC120575321
unassigned_transcript_885 other upstream 1883081 35237296 ~ 35237377 (+) True trnas-uga_23
XR_005641977.1 other downstream 796251 37934062 ~ 37956280 (+) False LOC120575390
TU218883 other downstream 1332903 38470714 ~ 38471325 (+) True G161714
TU218981 other downstream 1632896 38770707 ~ 38772216 (+) True G161792
TU218982 other downstream 1645252 38783063 ~ 38784044 (+) False LOC120573912

Expression Profile