RNA id: TU218583


Basic Information

Item Value
RNA id TU218583
length 323
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G161476
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 37705619 ~ 37705941 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgaggtatcaatgaactcagcagagacttccttattcattggtgatggtttggcccgccccctatgttgaagccacgccctttttaataaatgctgacccatctaaggtagagtcttgtgtgaggtatcattgaactcagcagagacttccttcttcattggtgatggtttgatccgccccctatgcattagccacgccccttttcacagctaacgaaccgtatgacgtaaagtcttgtgtgaggtatagttgaactcggcggggagttcccttttcattggtgacaatttgcggcgtctgaatgccgcgcaaatgcacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218514 lncRNA upstream 18468 37635907 ~ 37687151 (+) True G161442
TU218512 lncRNA upstream 56858 37643595 ~ 37648761 (+) False G161442
TU218501 lncRNA upstream 111635 37593626 ~ 37593984 (+) True G161433
TU218491 lncRNA upstream 143991 37559927 ~ 37561628 (+) True G161423
TU218454 lncRNA upstream 160482 37485794 ~ 37545137 (+) True G161392
TU218613 lncRNA downstream 96288 37802229 ~ 37802441 (+) True G161505
TU218639 lncRNA downstream 230332 37936273 ~ 37936719 (+) True G161520
TU218643 lncRNA downstream 252002 37957943 ~ 37962475 (+) True G161523
TU218655 lncRNA downstream 288906 37994847 ~ 38009171 (+) True G161535
TU218667 lncRNA downstream 335825 38041766 ~ 38045025 (+) True G161546
XM_039826049.1 mRNA upstream 480730 37193977 ~ 37224889 (+) True LOC120575332
XM_039824737.1 mRNA upstream 512268 37177075 ~ 37193351 (+) True kpnb1
XM_039824738.1 mRNA upstream 512268 37177075 ~ 37193351 (+) False kpnb1
XM_039824735.1 mRNA upstream 537843 37146845 ~ 37167776 (+) True zgc:158376
XM_039823685.1 mRNA upstream 567808 37120483 ~ 37137811 (+) False LOC120573828
XM_039826052.1 mRNA downstream 64300 37770241 ~ 37779794 (+) True LOC120575334
XM_039826054.1 mRNA downstream 129379 37835320 ~ 37860518 (+) True psmd3
XM_039826156.1 mRNA downstream 179555 37885496 ~ 37929291 (+) True LOC120575386
XM_039826155.1 mRNA downstream 180333 37886274 ~ 37929643 (+) False LOC120575386
XM_039826171.1 mRNA downstream 228121 37934062 ~ 37956436 (+) True LOC120575390
TU218278 other upstream 586368 37115823 ~ 37119251 (+) False utp18
TU218032 other upstream 1230899 36469645 ~ 36474720 (+) False LOC120574801
TU217802 other upstream 1580067 36089620 ~ 36125552 (+) True G160851
TU217642 other upstream 2056635 35626515 ~ 35648984 (+) False LOC120575321
unassigned_transcript_885 other upstream 2468242 35237296 ~ 35237377 (+) True trnas-uga_23
XR_005641977.1 other downstream 228121 37934062 ~ 37956280 (+) False LOC120575390
TU218883 other downstream 764773 38470714 ~ 38471325 (+) True G161714
TU218981 other downstream 1064766 38770707 ~ 38772216 (+) True G161792
TU218982 other downstream 1077122 38783063 ~ 38784044 (+) False LOC120573912

Expression Profile