RNA id: XM_039826188.1


Basic Information

Item Value
RNA id XM_039826188.1
length 1203
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC120575397
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 38080093 ~ 38088521 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCATAGCAGGCGGTGCTTACAGATAGCAGCTCATCTGCAGAGACCTGGACGTCCCAGAGCAGTGAACAGGATCGCTGGGTATCGCTCACTGAGAAGTCTGACTCGTTGATCCTACTTTTGAGAAAGGAAGATGGCAACAATGAAAGAGGTTCTCTACTTAGCGATGAAGAAGCTGACTGTGGAAGAGTTTAAGGATTTTAAGTACTACCTGCTGGAGTACGGATCCACAGACCAGCGAGCGCAGTCCAGTCGAGGTTACCCGGTGATTACTCAGGCCGACCTGGAGAACGCCGACAGACGGAGGACCGTGGATCTGATCGTTCAGACGTACAACCAGCAGCCGCTGGAAGTCACCCAGGAACTGTTATTAAAGGTCGGGAGAGGCGACGTAGTGGACCATTTGGCTCAGAGCAAACCCGGAGCTCCTATGCAGATAGACAGCGCTGCAACACCCTCAGCTGGAGCAACTGGTGTGAATACCATGGCCGATGGCAAGCACTTTGTGGATAAACATAGAATCAAGCTGATCGACAGAGTGAACAACATCGCAGTCATTTTGGATGAGCTCCTCGAGGAGGATATCCTCCAACAAGAGATGTATGATAAAATCAGGGTTCTGCCTACCAGTCAGGAGAAGATGAGGGAGCTCTACTCTGGGCCTCTGAAAGCTGGTGGAATAAGGTGCAAAGATAAATTCTACAGCATCCTTGAGAAAAAGGAGCGGTATCTAGTTGATGAGCTCAAGGAAATGAAGTGATTGTTATAATGAAATCCATTTTTAGATCAAACATACCGTCCACCTAAAGACATGTTTTATACAATAACAATGGGGCATTAATAATGTAATCCTATGTCTCTGTGGGGGCTTTCTAAAACAATTTTTCCACATatgtttatcagagcttttgcCCTTAATTTTACTCTTAAGTTAGTAAGACATCATTTTGAATGACAAAGAAAATTTAATAGATTATTTATCAGACAATCATGTaagaaattaattaatgttcTCATGTAATGTTTTTATCCAACATACCAAATGAGAGCATGTAATGAGTCTGTTTAACATAATCATTTTATGTAAATGGAACATGCTAGATCATAAATTATTATCCATAAGTGTTGCATGTAAAGCCCATTTGACCTTTCATATATGTCAACatatgttttatattgtttttgatCAGCTTTATTATGCCCAA

Function

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218679 lncRNA upstream 5526 38069494 ~ 38074567 (+) True G161558
TU218667 lncRNA upstream 35068 38041766 ~ 38045025 (+) True G161546
TU218655 lncRNA upstream 70922 37994847 ~ 38009171 (+) True G161535
TU218643 lncRNA upstream 117618 37957943 ~ 37962475 (+) True G161523
TU218639 lncRNA upstream 143374 37936273 ~ 37936719 (+) True G161520
TU218713 lncRNA downstream 135585 38224106 ~ 38224407 (+) True G161589
TU218714 lncRNA downstream 151834 38240355 ~ 38242827 (+) True G161590
TU218621 lncRNA downstream 164435 38252956 ~ 38254040 (+) True G161512
TU218823 lncRNA downstream 169596 38258117 ~ 38264333 (+) True LOC120575403
XR_005641978.1 lncRNA downstream 169630 38258151 ~ 38262044 (+) False LOC120575403
XM_039826193.1 mRNA upstream 54977 38021774 ~ 38025116 (+) True LOC120575400
XM_039826192.1 mRNA upstream 95594 37978980 ~ 37984499 (+) True LOC120575399
XM_039826171.1 mRNA upstream 123657 37934062 ~ 37956436 (+) True LOC120575390
XM_039826172.1 mRNA upstream 137094 37934062 ~ 37942999 (+) False LOC120575390
XM_039826173.1 mRNA upstream 137094 37934062 ~ 37942999 (+) False LOC120575390
XM_039826180.1 mRNA downstream 71471 38159992 ~ 38202432 (+) False samd14
XM_039826179.1 mRNA downstream 71473 38159994 ~ 38202432 (+) True samd14
XM_039826186.1 mRNA downstream 178225 38266746 ~ 38268039 (+) True LOC120575395
XM_039826190.1 mRNA downstream 182829 38271350 ~ 38287654 (+) False LOC120575398
XM_039826189.1 mRNA downstream 182831 38271352 ~ 38287654 (+) True LOC120575398
XR_005641977.1 other upstream 123813 37934062 ~ 37956280 (+) False LOC120575390
TU218278 other upstream 960842 37115823 ~ 37119251 (+) False utp18
TU218032 other upstream 1605373 36469645 ~ 36474720 (+) False LOC120574801
TU217802 other upstream 1954541 36089620 ~ 36125552 (+) True G160851
TU217642 other upstream 2431109 35626515 ~ 35648984 (+) False LOC120575321
TU218883 other downstream 382193 38470714 ~ 38471325 (+) True G161714
TU218981 other downstream 682186 38770707 ~ 38772216 (+) True G161792
TU218982 other downstream 694542 38783063 ~ 38784044 (+) False LOC120573912

Expression Profile