RNA id: XM_039826182.1


Basic Information

Item Value
RNA id XM_039826182.1
length 3718
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC120575393
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 38345109 ~ 38372796 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gggaaacaaatAGCACATTGTTTGCAGTTGtaacgttccacttcctgttGACAGCCAGTATCTGGGAGTGGCGCGCGCACACGaTCCTGGAACTCCTGAACCTGCAATGGCTGAACTTGACTAGAACCACCAGGACTAACAGAGACTCACAGAGACATCAGAGACTCTCAGAGACTATCAGAATCGCACAGAGACACTCTGTGACTCTCAGAGACATCAGAGACTAACAGAGACCCACAGAGACATCAGAGACTCTCAGGAACGCACAGAGACTCTCAGACTCTCAGTGACTCTCAGTGAATCTCTGTGACCCACAGAGACCCTCAGAGACTCACAGAGACTCACAGAGACTCACAGAGACTCTCAGAGACATCAGAGACCAACAGAGACCCACAGAGACTCACAGAGACCCACAGAGACATCAGAGACTCTCAGAAACTCACAGAGACTCTCAGAGACTCTCGGAGACCCACAGAGACTCTCAGAGACACTCAGAGACTAACACAGACCCACAGAGACACTCTCAGAGACTTTCCGAGACATCAGAGACTGCAATGCAGATGTATGCGATGAACATTAAACCTGTGACTGTTATCCTGCTGGTCCTGCTGCTGGTGGGattctactactactactactactactactacttgtCCCagtacagattCAACGTTCCACCATGTCCTACCAGCTGTTCGACTTCTGAACCAAAGGACAGagttcctgatgatgtcatcccTACTGATTACGTGTTCCACCTGAAAACTCCTGACCAGAGCCTGGCGGACACTGCACAtctgcagtacAGCCAGCCGAGCATCGTAAAGGGCCGTACGGACGTGGTGGCCGTGACGCCCTGGCTGGCTCCGATTGTCTGGGAGGGAACCTTTAACCCAGTTCTCCTCGACAGCATCTACAAGCAAAAGAAAATCAACATCGCAGTCACCGTGTTTGCTGTCGGAAAGTACATCATGTTCCTGAAGAACTTCCTGGAGACAGCAGAGAAGCACTTCTTTGTCGGCTTCAACGTGCACGTTTACGTGTTCACCGACCGTCCGAAGGAGGTGCCCAAAGTCAACATGGCCCCCGGCAGACAGCTGACGGTGTGTTCAGTGCCCAGCTCGAATCGTTGGCAGGAGATCTCCGCCCGAAGGATGGAGCTCATCCAGAAGCTGATAGAAGAGCAGCTCCGTAAACATAGCAACTACATCTTCTGTCTGGACGTGGACTCGCAGTTCCACAGCCGCTGGGGGACCGAGTCGCTGGGCGGACTGGTCGCCGTCATACACCCAGGTTACTACCTGGATGATCGCGGCAAGTTCCCGTACGAGCGTCGGCCGGAGTCCAGAGCCTATGTGGCTCACGGCGAGGGCGACTTCTACTACTGCGGGGGGGCGTTCGGAGGCCTCCTGCAGGAAGTTTTCCTGCTCGCCAATACCTGCCGCTCCAACTTCGAGGAGGATGCCAAGAACGCCATCGAGGCCGCCTGGCAGGAAGAGAGTCACCTCAACAGgtacatGTGGATCAACAAACCCAGCAAGGTTTTGTCTCCGGAGTATCTTTGGCAGGACTTCAAACCCAGAAACCCTGAAGTTAAAACCATCAGATTCTCTGGAGTTATCAAGAACTACGCTGATATCCGACCCAACGTCTGAGAGGTGGCCCAAACCAAACTGAACCAGACTAAACCGGACCGAACCGACTGACACTGGctgtgtgacttcattctcctTTATCTTTGCAAAGCAACCccagagttttcaaaccaaaaagaggcagcagtgtttccaaatgtggGCAGCAGTGTCGACACCAGGGGTAAACCTTGGTCCCAACCTGGACTCTGTTTTCCAACATGTTTCTgggtctaagtgactgatgggaacaattATCTCTCTTTGGTTCAGTGCTCGACACAGACACTAATCCTTAGCTGCAGCCGCAGAATGAAGTCCCACtccctcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtaatctcaTCTTCTCTGTTCCTTGGTTTGATGGCCGGTCCGGCCGCTCATTCCTGAGTTTATAAAGAGACTTGTGacatgtagggctgggtatcactCAAAAACTTTAGATATCCGTACCAATACCAATACTGTTACTCTGCTACCAATACCTTTTTTGATTCCATTTTTATAAAACAGAAATGACAACACAACTTCTTGCTTGGACAAGACGGTCTCTTTCGTCAGCGATATTGCGTGTTGATCCTTCATTGCTAACGGTCAGCATTTAAGTATGGCTGTCTCGACAGCTGCAATCACCTCAGTTTCACAGTTCATTAATATTAAACATGTCACGTGTTGAAACTGCACCAAAACTGCGATACTGGGTGGCCAGCAACGCGCCCGCTAAGTGTGAAGTAAACCGGATGAACAGAAGTttgaaagaaacaaacacagagCACCCtctctctgagaatctcttttatatccaagaTAAACTGGTTTTGTAACTGAAGTTCCCCTAACCTAACTGACATCCAGTCAGAAATGTCCTAAAGTTCCCCTAACCTGACTGATATCCAATCAGAAACCTACTAAAAAGGAACCATGGTGAATCAGAATTGATTTAGGAAACcattggcgatacccagccctagttttaaAAGCCAGAGTTCAGTTTGAAGCTTCCAGCTTTTCCTCCACTTTTGAGAACATGTTAGAGAAGCGTATTTTACTTGATATTTTGgatagctagcgttagctggatAGGTAGCATGCTAGTTATTATGGTACGTAGGATTTAAAggtgatttcatttttgtctcaaatggtaggcatctctccttgatccgctagctgcctgccccctgaacacactgtcaaaaagcccggtctctggagacaacacaggggtcgtaaacctcaaacaaacactaggggcacaggctgtgcaccaaaatacaacaaaccacgttccagACAATCACCGACAATATGgtagggggagggggtgggggttagtgacagttagtcatgacagttacggaaacatggggggagggacaaacctgctctgttttgtttgaaatttaCTTGGAATGTCAACAGAAGTGAtttcatgcaggaactcatagtgcagtTATTTGGCACATTGAAGAAATGGCTCCTTACGAAGGTGAATATTTTAAGTCTTTCCTGTAAAAATCAAATGCATCCGCTTATTTGCCTCGTGTACGTAACACGTCATGGCGTTGTTTACCTCCcatcagaactactacgaccactagagggcgccaccactacaaacctaaatataggtcagaactactacgaccactagagggtgcCGCCACTGATGCTGGGACAAATGGgttgggggcgggggggggactCAGACTCAACTCTGCTTATTTAGACACTCCTCTCCAGGTACATAAAGTTTCAGGTTAGGCTGTTtcccttgtttccagtctttatgctaagctaagtagCTGCTAACTGTATCTTCATATGTACTgtacagaaagaaaacaaagatgTTTATCCCCTAACTTTTAAACGTTCCCTTTTAATTACTGTGAAGATGTTGGGTGAACTCTGCAGGActcttgttgtttttgtctataATTTGTCCAACATGATAGTAATTCTTAATTTAAGggctgtctgtctttctctcaggTGTTTGTGTtccaataattaaataaaataatcctTGGTTTCAGAAATAAA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218823 lncRNA upstream 80776 38258117 ~ 38264333 (+) True LOC120575403
XR_005641978.1 lncRNA upstream 83065 38258151 ~ 38262044 (+) False LOC120575403
TU218621 lncRNA upstream 91069 38252956 ~ 38254040 (+) True G161512
TU218714 lncRNA upstream 102282 38240355 ~ 38242827 (+) True G161590
TU218713 lncRNA upstream 120702 38224106 ~ 38224407 (+) True G161589
TU218861 lncRNA downstream 14003 38386799 ~ 38437964 (+) True G161699
XR_005641982.1 lncRNA downstream 26547 38399343 ~ 38399685 (+) True LOC120575407
TU218825 lncRNA downstream 54223 38427019 ~ 38429879 (+) True G161669
TU218877 lncRNA downstream 63135 38435931 ~ 38441249 (+) True G161709
XR_005641986.1 lncRNA downstream 107482 38480278 ~ 38485147 (+) True LOC120575412
XM_039826190.1 mRNA upstream 57455 38271350 ~ 38287654 (+) False LOC120575398
XM_039826189.1 mRNA upstream 57455 38271352 ~ 38287654 (+) True LOC120575398
XM_039826186.1 mRNA upstream 77070 38266746 ~ 38268039 (+) True LOC120575395
XM_039826180.1 mRNA upstream 142677 38159992 ~ 38202432 (+) False samd14
XM_039826179.1 mRNA upstream 142677 38159994 ~ 38202432 (+) True samd14
XM_039826178.1 mRNA downstream 457 38373253 ~ 38380324 (+) False LOC120575391
XM_039826174.1 mRNA downstream 787 38373583 ~ 38380324 (+) True LOC120575391
XM_039826177.1 mRNA downstream 2775 38375571 ~ 38380324 (+) False LOC120575391
XM_039826175.1 mRNA downstream 2896 38375692 ~ 38380324 (+) False LOC120575391
XM_039826057.1 mRNA downstream 167688 38540484 ~ 38552483 (+) True LOC120575340
XR_005641977.1 other upstream 388829 37934062 ~ 37956280 (+) False LOC120575390
TU218278 other upstream 1225858 37115823 ~ 37119251 (+) False utp18
TU218032 other upstream 1870389 36469645 ~ 36474720 (+) False LOC120574801
TU217802 other upstream 2219557 36089620 ~ 36125552 (+) True G160851
TU217642 other upstream 2696125 35626515 ~ 35648984 (+) False LOC120575321
TU218883 other downstream 97918 38470714 ~ 38471325 (+) True G161714
TU218981 other downstream 397911 38770707 ~ 38772216 (+) True G161792
TU218982 other downstream 410267 38783063 ~ 38784044 (+) False LOC120573912

Expression Profile