RNA id: XM_039823974.1


Basic Information

Item Value
RNA id XM_039823974.1
length 3550
RNA type mRNA
GC content 0.51
exon number 27
gene id pold1
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8876256 ~ 8894908 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCTCAATGTCGTCATTGGCCATTCCTTTGCTATTGGGCCTAGTAACAAAACGAAAAATTTCCGCGCTTTCAGTTCACAAATTGAAGAAGAGTGGCGGGAGCTGTTGTCAACCTGGGGCTGTTGTCAAGAAGTTACATTGATAGTCATTTATAACTTCGTTAGAAACGCACCAGCCGTTGATCTGCCGTAGTCTTGACAGGTTTCACAGTGAGATTAGTCCTACGATTGGGCATGGATTATAAAAGACGCAATGGTGGCCCTTATATGGGTGGTGCATCCCAGGCCAAACGGGGTAAAACAGCTAGTGAATGGGAGGACAGTCCATCACAGTTTGAAGAGGAATTGTCCATGTTCGACGAAGCAGAGATGGAGGCAGAGGAGATGGAGGGGCAGGCAGGTCATGATGTCATTCCTGTAGGTGACCTCTTCTCAGCAGACCTTAACCCTCGTTGGCGGCGGCCTCATGCCCCTTCACTGGACCCATCATCTGATACTTTGGTGTTTCAGCAGATTGATCTTGACTATTATTTAGGGCCAACAGTGGCTGGCATGCCTGGCCAGTCACAGGGAAAAGTCCCAATCATTCGAATGTTTGGGGTGACAGACAGTGGCAACAGTGTGTGTTGCCACATCCACGGTTTTGCACCTTACTTCTATGTTCCTGCACCAAGCGGGTTCACATCTGATTACCTGGGTGAATTTAAAAGAGAGTTGAACTCTGTTGTCCTGAAGGACATGCGATCCAATAAGGACAACATCTCTGTCACAGTTTTGGCTGTGGACATTACCCGCAAAGAGAGCATGTATGGTTATCATGGAAAACGCAGTCTGGATTTTTTGAGGATAACAATGGCGATGCCTCGTCTCATTGCCCCAGCAAAGAGACTGCTGGAGCAGGGCTTCAAGTTTGGACCTTTCCCCATCCAGGTTTACCAATCCTTTGAGGCCAACATAGATTTTGAGATAAGGTTTATGGTGGACAGTGATGTGGTGGGATGCTGCTGGATTGAACTTCCCAAAAGCAAGTACAGAGTGCGTGAAGAGAAGAGCATGGGGGGCACGGATGCTCGGTACCCAGGCAAGGAGTCCTTGTGTCAGTATGAGGTGGATGTGGGATGGACAGATTTGATAAGACACCCTGCAGAAGGAGACTGGCAAAGGATCGCACCGCTCAGGGTCCTCAGCTTTGACATCGAGTGTGCAGGAAGAAAAGGAATCTTCCCAGAAGCAGACAAAGACCCTGTGATTCAGATAGCATCTATGGTGCAGCGGCAGGGCGAGACAGAGCCCTTCATTCGCACTGTGTTCACTCTCCAGTCCTGCGCCAGCATCGTGGGCTCTCAGATATTGTGCTTTACACAGGAGAAACAGCTACTGCAGAGCTGGGCTGAGTTTTTGAGGACGGTGGACCCAGACATCATCACTGGATACAACATCCAAAACTTTGACTTTCCCTACTTGATCGACAGGGCAGCTGCTTTAAAGgtgaatCTCTTTCCTTACCTCGGCCGAGTGCGAGGCAGCAAGTCAGTCTTGCGAGAACTAAACTTCCAGAGCAAGCAGATGGGCCGCAGAGAGAACAAGACCATTAACATGGAGGGCCGGGTTCAGTTTGATCTCCTGCAGGTTCTTCTCAGGGACTATAAACTGCGCTCGTACACACTGAACGCAGTGAGTTTCCACTTCCTGCAAGAGCAGAAAGAGGATGTGCAGCACTCCATCATCACTGATCTGCAGAATGGCAATGAACAAACACGTCGTCGTTTGGCTGTCTACTGCCTGAAAGACGCCTACCTCCCACTGCGCTTGCTGCAGAAGCTGATGTGTGTGATTAACTACATGGAGATGGCCAGAGTGACCGGTGTGCCTCTCACCTACCTGCTATCAAGAGGACAGCAGATCAAAGTCGTCTCTCAGCTGCTGCGACAGGCCATGAAACAGGACCTGGTCATGCCCGTTGTAAAAGCAGGTGGAGGAGAAGACTACACTGGAGCGACTGTCATTGAGCCAGAGAAAGGGTATTACAGCGTCCCTATTGCCACCCTGGATTTCTCCTCTTTGTATCCGTCCATCATGATGGCTCACAATCTGTGCTACACCACCCTGCTGCAGAAAGGCTCAGCAGAGAAACAGAGCCTCTCACCAGAGGACTTCATCAAGACTCCGACTGGTGATCTGTTTGTGAAGAGCTCTGTGAGGAAAGGACTTCTACCTGAGATCCTGGAGAATCTGCTGTCTGCCAGGAAGAGGGCCAAAACGGAGCTAAAGAAGGAGACTGACCCTTTCAAGAGGCAGGTGCTGGACGGCCGACAGCTCGCACTCAAAATCAGCGCAAACTCCGTCTATGGCTTCACAGGTGCTCAGGTGGGCAAGCTGCCCTGCCTAGAGATCTCACAGAGTGTCACAGGTTTTGGAAGACAGATGATCGAGCAAACTAAACAGTTGGTGGAGTCCAAGTACAACATTTCCAATGGTTACCAAGGTGATGCCAAGgTAATTTATGGGGACACCGACTCCGTCATGGTTAAGCTTGGAGTTGCTACGGTGAGGGAGGCTATGGATATTGGGACGGAGGCAGCAGAGTGGGTTTCGTCCCATTTCACACCGCCCATCAAACTGGAGTTTGAGAAGGTGTACTACCCATACCTGCTGATCAACAAGAAGCGCTACGCTGGCCTCTATTTCTCCGCCAGTGCAGACACGCATGAAAAGATGGACTGTAAAGGCATTGAGACTGTCCGCAGAGACAACTGCCCTCTGGTGGCTAACCTCATCAACACCTGTCTGCAGAGAATCCTCatagacagGGATCCCCAGGGTGCTGTGGCTCATGCTAAAGAAGTGATCTCAGACCTACTGTGCAACCGTATCGACATCAGCCAGCTTGTCATCACCAAGGAGCTGACGCGCACCGCCCAGGAGTATGCTGGCAAACAGGCACACGTGGAGCTGGCTGAGAGGATGAAGAAAAGAGATGCTGGCAGTGCCCCGAACTTGGGAGACCGAGTTCCATACGTCATTATTAAGGCTGCAAAGGGAGTAGCAGCATACATGAAGTCAGAGGACCCGATCTTTGTGCTGGAGAACAACATTCCTATAGACACACAATACTACCTGGAGCAGCAGCTGTCCAAGCCCCTGCTGAGAATATTTGAGCCAATCCTGGGAGAGAGCAAGGCCGAGAACATCCTGCTCAAGGGCGACCACACGCGCTGCAAGACTGTGTTGACCTCGAAGATCGGGGGCCTCATGGCATTTGCTCAGAAGAGAAGCACCTGCATTGGCTGCAAAGCTGTGCTCAAGACGGACGCGGCTGTGTGCGATTTCTGTAAGAAGAAGGAGTCTGAATTGTACCAGAAAGAGATTTTTCACCTCAGCACACTGGAGGAGCGTTTCTCTCGCCTGTGGACTCAGTGTCAGCGTTGCCAGGGCTCCCTCCATGAGGATGTGCTCTGTACCagTCGGGATTGTCCCATCTTTTACATGAGAAAGAAAGTTCAGAAAGATTTGGATGACCAGAGTAAGCTGGTGGATCGTTTTGGATGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207270 lncRNA upstream 72691 8806854 ~ 8810032 (+) True G153026
TU207260 lncRNA upstream 80062 8796506 ~ 8802661 (+) True G153022
TU207235 lncRNA upstream 178532 8703916 ~ 8704191 (+) True G153005
TU207226 lncRNA upstream 198306 8681431 ~ 8684417 (+) False mapk3
TU207224 lncRNA upstream 198882 8681431 ~ 8683841 (+) False mapk3
TU207309 lncRNA downstream 909 8895639 ~ 8903846 (+) True G153049
TU207312 lncRNA downstream 909 8895639 ~ 8903846 (+) False G153049
TU207322 lncRNA downstream 29857 8924587 ~ 8927470 (+) True G153058
TU207323 lncRNA downstream 29857 8924587 ~ 8938805 (+) False G153058
TU207336 lncRNA downstream 62309 8957039 ~ 9021495 (+) True G153067
XM_039823978.1 mRNA upstream 16194 8863841 ~ 8866529 (+) True aspdh
XM_039823979.1 mRNA upstream 16194 8863847 ~ 8866529 (+) False aspdh
XM_039825139.1 mRNA upstream 22224 8856478 ~ 8860499 (+) False hspbp1
XM_039823792.1 mRNA downstream 64518 8959248 ~ 8969045 (+) False eps8l1a
XM_039823791.1 mRNA downstream 64518 8959248 ~ 8969044 (+) True eps8l1a
XM_039823794.1 mRNA downstream 64518 8959248 ~ 8969044 (+) False eps8l1a
XM_039823793.1 mRNA downstream 64518 8959248 ~ 8969043 (+) False eps8l1a
XM_039825618.1 mRNA downstream 142171 9036901 ~ 9042045 (+) True asphd1
TU207249 other upstream 120141 8757246 ~ 8762582 (+) True G153016
TU207220 other upstream 180952 8696968 ~ 8701771 (+) True ypel3
XR_005641904.1 other upstream 197958 8666470 ~ 8684765 (+) False mapk3
TU207168 other upstream 433426 8445446 ~ 8449297 (+) False mcrip1
XR_005641789.1 other downstream 64518 8959248 ~ 8969045 (+) False eps8l1a
unassigned_transcript_719 other downstream 166586 9061316 ~ 9067135 (+) True LOC120574330
TU207609 other downstream 179141 9073871 ~ 9116603 (+) True G153245
unassigned_transcript_720 other downstream 187117 9081847 ~ 9086215 (+) True LOC120574580
unassigned_transcript_721 other downstream 206455 9101185 ~ 9101623 (+) True LOC120574615

Expression Profile