RNA id: TU207270


Basic Information

Item Value
RNA id TU207270
length 1672
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G153026
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8806854 ~ 8810032 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAAGTTTAAAACTGCAGGTCTAGACAGCAACTCATAACTAGCACCATTGGATAAACATACACAAGAAAGTATGAATTTATAATTTGCTGTGCAATTGGTATCTGTTGTTTATATTTAAATTATAATGGTTTGATATCAATGTAATATACATTATTAGAAGCATGTGTGAAATGTGGCTTTGTAAAGTTAGTGTTATTGTAGTGTTTCAAAAGAGGACATTGAGGCATAGGATTGTCACATAAGATCTTTCTTGCActcttttaaacaaaaatatctACATGAACAAGACACAATCTCAAATAAGTTGCagttattttctcttttctggaCATCATGTAGGATCCATTTAAcgaaaaaggtaaaataaaatactgaaaaGTTAGTTTGAAATATTCTAATGTTTAATGAAAGGGTGATGTAATGATCAGCAAGAGAGGGGTACAGTAAAATTACGAGGGAAAGGGGAAAGAGCTCGGTACCCAACACAGGTCGGTCCGTTTCAATTGCAATACAATTCAATCCAGATGAACTGCTGCCATACCCTTGTGCACTTGCTTGTGTGTCAAGGATGCAGGTGGAGGGCGCAGGGGAGGAGGCGCAAGGGTACTACAGAGATAAGTGTGCTGTCGTTGTCACAtagaagtaaagaaaaagaaaaaacaattccTTCTAGTTTTAACTATATCCCTCTGATCATAGTTCAAAATGGAAGCACCCACCATGTGAGGAGCTAACTGCTGGGCCTGATCGTGACTTCCACTTTTCTTACATCGGGGGGGTGGATaggttctgttttttttttcttccttttttctgtTGGTTCTTAAACCCTCTTCAGAGTGCACTCATACCGCATAGAGTTCGTAGATCTTCTTGGCGCAATACACCAGGGCAGCCAGTGCTATCGTATTATGGAGTCTCTTTCTGTGGACGTCATCTCTGCGTACCAACACCACGGGCGTCGAGGAGGTGAGTGTATGCAGGGGCAGCCGCGAGAGTTTTTGGCTGTCGTACTCCACCTGGTACTTGCAGCAGGGATCAAATTGCCATGAAATCCCATAGAGGGCAGAGCAGGCCACACTGAGGGCGCCAGCGGGCAACGCCACATAGCGCGAGTATTCAACAGGCAGTGAAAGTGGCGTCAGGAGGCAAGCAGCACCTGACAACACGGCCGTCTTGTGCAGGCAGTTGCCCACGGTAATCCAACGGGCCGTTTCATCTCCGATGCGGGTGGGCTCGATGACAATGTATTTATACTGGGCCTCCAGCGCCTGCTCCAGCTCGTACTCAAACTGGTCCTGCGCATTTTCCCCGTTATAGATCTCGTGCACAATGTAGCAGTCTGTCGCCGCCATCACTCCCCTCTCCCTGCTTACTGGGACACCGCGCCTCCTTCCCAGCGACGCCATGTTGGAGATACAACCGTGATTGCAGTTGACGTATGAGAGCACCAAGCCTTCTGGGTAATGTAGTGTGTCAAGGCAGTCGGCGCATCACTTCGACTTGAATGAGGACTACTATTCCCATGAAGCTATAAAGCAAGAGTACCTGCCTTTACGTATTTTATAATAGCACATAGAAGTTTGAGAGGTCAGACCATATTCTAAATGAAGCTAACACAAATAAACAGAGGTATGTTTGTCCATCATTTATCAAGTGACTATATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207260 lncRNA upstream 4193 8796506 ~ 8802661 (+) True G153022
TU207235 lncRNA upstream 102663 8703916 ~ 8704191 (+) True G153005
TU207226 lncRNA upstream 122437 8681431 ~ 8684417 (+) False mapk3
TU207224 lncRNA upstream 123013 8681431 ~ 8683841 (+) False mapk3
TU207214 lncRNA upstream 154016 8651618 ~ 8652838 (+) True G152991
TU207309 lncRNA downstream 85607 8895639 ~ 8903846 (+) True G153049
TU207312 lncRNA downstream 85607 8895639 ~ 8903846 (+) False G153049
TU207322 lncRNA downstream 114555 8924587 ~ 8927470 (+) True G153058
TU207323 lncRNA downstream 114555 8924587 ~ 8938805 (+) False G153058
TU207336 lncRNA downstream 147007 8957039 ~ 9021495 (+) True G153067
XM_039824548.1 mRNA upstream 11853 8779616 ~ 8795001 (+) False cramp1
XM_039824546.1 mRNA upstream 11853 8780948 ~ 8795001 (+) True cramp1
XM_039824547.1 mRNA upstream 11853 8780948 ~ 8795001 (+) False cramp1
XM_039823667.1 mRNA upstream 67278 8733708 ~ 8739576 (+) True nme3
XM_039824556.1 mRNA downstream 7705 8817737 ~ 8834110 (+) True LOC120574270
XM_039824558.1 mRNA downstream 7705 8817737 ~ 8834110 (+) False LOC120574270
XM_039824559.1 mRNA downstream 7705 8817737 ~ 8834110 (+) False LOC120574270
XM_039824560.1 mRNA downstream 7705 8817737 ~ 8834110 (+) False LOC120574270
XM_039824557.1 mRNA downstream 7705 8817737 ~ 8834110 (+) False LOC120574270
TU207249 other upstream 44272 8757246 ~ 8762582 (+) True G153016
TU207220 other upstream 105083 8696968 ~ 8701771 (+) True ypel3
XR_005641904.1 other upstream 122089 8666470 ~ 8684765 (+) False mapk3
TU207168 other upstream 357557 8445446 ~ 8449297 (+) False mcrip1
XR_005641789.1 other downstream 149216 8959248 ~ 8969045 (+) False eps8l1a
unassigned_transcript_719 other downstream 251284 9061316 ~ 9067135 (+) True LOC120574330
TU207609 other downstream 263839 9073871 ~ 9116603 (+) True G153245
unassigned_transcript_720 other downstream 271815 9081847 ~ 9086215 (+) True LOC120574580
unassigned_transcript_721 other downstream 291153 9101185 ~ 9101623 (+) True LOC120574615

Expression Profile