RNA id: XM_039824560.1


Basic Information

Item Value
RNA id XM_039824560.1
length 6552
RNA type mRNA
GC content 0.46
exon number 18
gene id LOC120574270
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8817737 ~ 8834110 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtagttcttTGGGACACTATTGTAAAGACCTGTTTGTGATTTGTTCTCTCTGGTTTTTGCCAGATCGAGTGAGAGGGAGCGCACCTCTTCTGCAGATGGATAAAAATATCAGCCAGAAGTTCTCACGTTTATCTTAATATTCTCATTCAGTGTTTTTTCATTATACTGCCGAAAATGATGTCCAAGGCGCCAAGGTGGCCTGATACCCTGGTCAACTCTAAGACCAACAAACCTGCACAGAAGACAGGGGGGAAGGAACCAGCAGCATTAACTGTACCTGCATCTAGTAGAGGTAAACAGACTGGCAGCAGTACGTCTAAAACCAGCATTACTGTTGGAAGGAGCAAAagcctcagcagcagaggtagTGACTCAACTGCTAGCGGCAGTAAGGCTGGTGGCAGTTTGAAAAGAGGCAGCCTCAGCCACCAAGGCCACCAGGGTACCAGGCAAGCATCTTGCCTGGCCAGACCAGCTTTCCGCCTCTGCAGCAGCCGCAGCTTCTCGTCCCTCCACACctcctctctcactgctgcTCCGTTCATGAGAAGCAGTCGCTCTCTCAGCAGACTCGACCAAAGAACCACCGGAGGCGATTCAGACCATGCAGTATCAAGTTCACAAGtaaaaaaaggacaaactgCAGAAAAGAAAGCCCTGAATTCTGGCCAGCTGTTCTCCTCGGATGCACCTGAGCACTGCCAAATCagGGATAACAAAGACCAGTGTCATGGCGATAAAgctgagaaaatgaaaacaagcagCTCCTCTGAGCCACTGGAGTCTTCCTCCTCTTTGGTTTCCACCACTTCATTTCGTCATCACTGCAACAAAGTAAAGAAacagACCAGAGATGGAGTGTACACGCTCGGTGCTATGACCTCTGGGATGAGACACAACTGGGTCCAAGCAGTGTTGAAGAATGTGAGGCCCAGTCTTACCCTTGACGTCACAAGCTCCCTTTCAGAGCAAGAGACTCATCAGAAATCACAGCATGCAGACTCACTGTCAGTTGAGGGTCTGGAGAAAGCTGAAAACCCAGACAGCTTTTTGCAAGAGCAAAAAACCAGTGACAGTGCAGAGGAAACACATCAACAGCAGAAAAAAGTCAAACTGCAGCCAGAGGCAGAGGAGAGTTCTGCTGATGCATCGTCAATGATcgcctcctcctctgctcctccaCGGCGGGTGGAGGAGGTTGAAGGTGTGACAGATGTATCATCGTGTGTAGAAGGAGCTGGAAGTGACGGCTCTACCTCCACAACAATACTTTCAAATCTTGAGTGTTTGGAGCAGCAAGTATCAATAAACGCCACCTGTGAGCGCACAAAGGAGAAGGATAAATTGCCCTGTGAGCAGCAAACTGGGCAACTTGTCAAAGAGCTGGAACAAACACAGAAGGAACTCTCTCGACTGCAGCAGTTAAACAGGGATCTGCAGGAAGAGCTAAAACGAGAGAGAGGGAAGCATTCCAAGGAAAGGGTGCATCCACAGAATGATCCTTTCTCCAACTCGTCTTCGGAACAAGCATTGGTTTTACAGCGGCTGCAGAAGATAAATCATGACCTCCACTTTGAGCTAGAGGCTCAAAAGAGTAGCCAGGAGGAAGCCAGGGAAGATGAACTACGGCGAAGGGTAGATCTCTTAGCTCAACAAGCGCAGCTACTGGTCACGGGTGACGCCACAGCACTTGCACAGGCCCAGCTGGAGCAAGATCGTCGGCAGTTTCGTGAGCAGCAGATGGAGTGGGAGCGTTGCGTGGCGACCCTGAAGGCCCAGCTGAGTGCCAGTGAGGAGCAGAGGAGGGAGGCCGGGTTGCGCTTCACACAGCTGCAGCAGGAGTTGCAGAGTTTCCACAGTCTCCAGCAGGACGCTGATCGCTTGCACAAACATCTCCAAGAGGTGACAACTCAACTTCATGCTAATGAGGAAGCGCAGGCTCAAAAGGAGGCTCGCCTGCAGAAGCACCTCACACTCCTTCAAACAAGTCAGGACAGAGAACGGAAGAGCTTGGCCGCTAGCCTGGCACATGCAGAGCAACACTCACACGACCTTCAGAAGAGACTGGACAGGGCTGAACAGCAGGTTGAGAGCCAGAATAAGACCCACACCTGGACCAGGGACATTGAGGAGGCTCAACAACAGCTTCAAGAGGAGCTAGCGTGTACAGTATCTACTGTGCAGAAACTTCAAGAGGAAAGAGAGCAGCTCGACCATCGCTGTCAAGAGCTGCAGAACCAGTTATGTGAGGCAGATGAGGAGGTGAGCAGGCTGCAAAGCCGCTTGAAAACAGATGAGACGCAATACTACAATCTTGAACACTCATACGAGAGAGTTAGTGAGGAGCTGCAGCTGGCCTTAGGGAAGGTGCAGCAAAAGGAGTCTGAAACACAGGATATACGAGAAGGCTACGAGAGACTCCTAGACAGGAAGGAGCAAGAGCTGAGTGAAGTTTTGCTGAAGATGGAAGTCCTAGGTAATAGCCTGGAGGACACGGAAGTGAAGCTGAATGACGTATTGAAAGGTTGTACCTGTGCCTTTTCTCAGCAGAAGGATGAGAAAAATGAGAGACAGACAACTGATCTTCTCACTGTAAATGACAGCAGGCCGAATGCAAGAGACTCGAATGCAGTTGAACATGCAGGAGATTACCCAGAAAGATTTATGTCTGTGATCCAGATGCTTGAAACCAAGCTTTATGTAACAGAGGAGAAACTAAGGGACATCATGCAAAGACTGGAGGAGCACCAGAGTCACATCAGCTGCCGGGACCCCCACCTTTGCTCCCAGCTAACTCAAAGCCGAGCCACCGCTCAGCACCTCAGTCTGCTGCTTCACAGTCAGGCCAAACAGAGCCAGCGCTTCGCCCAGGAGACAGAAAACCGCTGTAGGATGTTGGTCGGTAGGTTTCAGGTCGCACTGAACATCATACAAGCCTGCAGGGAGAGGCTCCAAGCCACTCCGATCAATATTACGGATTTTGAGAAGCTACTAGCAACCGTTGCTGCCTGCCTTCAGCAGGGAGAGAAAGATGCAGAGAAACAGCAGCATGAATCACACAATGAAAGCAAAGGAGAGGATAGGATCCTCAATGATGAGACATTAGCTGGAGCTGAGAGCAACATTAGTGCTCAGAGTAAACCCCCAAAGGATGACATGGAAAGTGTTGGGAAGTGTTTAATGAGGGAAGTATTTGTAGTAGAAAAAATTGTGTCTGTCCTTCAGAGTCAACATGGCATTGGGCAACTACCCTTAACATCAAGAGAGGATGTGGGGGATGTGGCACAAAAGTACAAAAACATAATCTCCCAAAGAATAGccttaaaaacagaaaaaaggacTGGGAGAGCAGAATGTGACAACAATGGACCTTTAGAGCAGGCCATTGTTGGAGTCTGTGCTGAAGCGGAGCTCATTTATGCTGCCTTAAAAGTTCAGCATCAATATGAGAGCACGACTCAAGTAAATAATCAAGAAGTGGAGCCTCAAAGGAAGAGTCTGGCAGATATTAACCCCCCAGAGTTGGCTTCCTATGAGGAGAAAGTGCAGGGAGAGGGCAGAGGTTCAGAAGGAGCTACAAAACCAGTTGAAAGGAATGAATCTGATGTCCAAAAGGTAGAAGCAGAGAAAGAACCAGACTGGTTAGCGCGACTAATATCCCGGCTGCAGAGAAGGGCTAAATCCTTACACCAACTCTGCCAGGAGATTTCTGATGGCAATGCAGTAGAGTGCAGAGTGGCTGATAATTGGGAAAGTGCTTCTGCGGCTGACTTAAATTGGATGCAGGAGCAGGCAAAGTTAATTTATTTGTTAGACAGGCTGCACTCAGATTTAGAGCAGCAGCAAAGTGAGGTGTTACAGGACAAACTGCAAGCTTTGTGCGAAGAGCAGGATATCACATTAAAGGATGAGCAGGAGGCTTTTAATCACACCTTATGTCAGCTTCAGGAGGACATCAGCGTATTAAGAGAAGAACTGGAGCGTGCTGAGCAAAAGATAGCATCTGTAGAGACTGGGAAGCAGAGACTCCTGGAAGACTTACGGAAAATCGAGGCTTATCACGAGGAACGGATGAAAAAACTGGAAATGGGGTTTCAAGAGAAGATTAGGGAACTGCAACAGATCCACGAAAAAGAGATGAAGCACTTGCATGGTTACTACACCAAGTCTTCCAAAGAGAAACAGACCAAAACCTGCACAGAGACACCTGCTTTGACCGAAAGTACCTCCTCCCTACCAGACCAGACTGCGGCGGAGAGAAAAACAATATTGGCAGGTGGTGCAGCAGCCATGAGAGAGGCTTACCAGAAAGATCTTGAAAAACTTGAGGCATCCTGTCATCAAGGTGTCACTGCTATGGAGGAAATGCACAGGCAGCTGATAGGTGATctacagcagcagcatcagacaGAGGTGGCAGCACTTCTGAAGGAGAAAGACAAGCTGCTGCAGGAAGAGACATCCGCCACAATGGCAGCCATTGTAGCAATGAGGAGAGCCCATAAACAGGAGCTGGAGAAAAGTCGATCAGCACAGCCCATCAAGGAGAGCGATGACATCGCACAACTGCGCGTGGAATATGAGAAGGAGATCCAGTTGATGCATAAGGAGCTCGAGGTGTTGTCGCTTCAGCACACTCAGAGATGCCTGGAAAACTCTCAGCTGAGCCAAGATCTGCAGGATGAGAAACAAGCTTTGATGCAGTACCAAAAAGAAAACCAGGAGCTCAAAAAGAAGCAGagagagacagatgaaaTGTCTCAACTACATTTCTCGCTAAATGGACAACAAGCACGTGTTGCCCCTCAAGTAAACAACTTCTATGAGATGGAGGTGATTCTGCGAGCAAGGGAGGCAGAAATGCAGTTTCTCAGACAGGAAGCTCGTTCTCTCAGGGAAGATTTGAAGCTTGCTCGAATGGACAAAATATATGCCCAGAACAAGCTCAAGGCCCTCTATACGAACAGCCAGGATGAACCCTATCATGATGTCAACAAACTCTGTGAAGATGTCAAGTTTGCCACAAGCGGGGACGCCTCAGGACAGAGCATCGAGGAAACTGTGACGAACACAAGTAATGCTGCTTTTCTGAAGAAAACCGAGAAATCCTCCCTCACACGTCAGATCAGAGGAGTGAGATCAAAGAGTTTAAAAGAAGGCCTCTCTGCCCAAGAAAGAATGAAGTTGTTTGAGTCATTCTGATCCAAACAAGATGAGAAAGTGGAATATATGTTTCAGAGTAAAACTGCTGTTTGGTCAGTGCAGTTTAAAGACAGAGGATGTATTATACATTATGTCTGTTATATGTAAcatttgttattacacagtatgTGTTATATTATATGTAACTGTTTTTTACTGTGTAAAAAGttgatttgttgtttgttgttgttgttaatatacTTTAGAAAATAtgcacagtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagggagagagaaaaggcaTCATAATACCACTAGAGGGAGCAACAAACTGTTTTAGATAACATTTCTAAAAGATTTACTCTAAAATATAACACTGTAATCAcaaagaaattatatatattttgttcgTCAGTACATTGCACAGTGTAACTTATAGACACACTGCCTGTGTTTTCATGAAATCACTCAGTGTGTTGCATCAGTTgtataaaaatgtgttattgttATGTTATTTACATATTGTACCACTAGATGTAGCATAATACAACATTTACTACTTTTGAAACAGAGGTTGATGTCGGTGTATCTTTTCTGATGACATGCAGTTGTTTTATGACCCAAAATATTTGAGCTGCAAAATCAAATTAGGGCAAGAATTTTAGGAAGGTTACTATTTTTTATCAACATATGAAACAATTAGTCATGATGTATGAAGATGTTCTATTCTGGCATCATTCAGTTATATAAATTCAAACAATAAAGTATTTGTTAGTTAACCAAAACACATGTTTGTGTTTCCCTGTTTCTCTGATTGCGACAGCCTATAAATAACTGTGTTGTAAGGTATGTAAATAGAAAATTATTATCAGTAGCATACTGTAAGGATAGGGAGCCTTTATTATCCCAGAGGGAGATTTGTTTCCACAGCAGGTACATGTTCCACACTGATGAAAAAGTATAGGCTACTATAACTAAAGAACAGTGTCaagattttaaatgaaaaagacaCAGAGCTTATATGGAGGTTCGGGTCACATATGTGTTGATATGGCCGAATGTCAGCAAAGAACTGAACCACTGTGCAGCTGTGCTTTTGTCAACAGCAGTGGCAGCGTGTGACACATGAACCTGAGGAGGCTGGTGCAGGAGAACACTGATGTCCGCTCTCTCAAAGGACTACACAGTACAGTACCTCATTAGTGGAGCATCAAGTCTGAACTGAGCCTGCCAGTGATGTCAGCAGGGTCTCCAACATCAGACCACACGTCATACAGGAGGAAAATAGTCAAGGATTCCCTGGTTTCATAGTTCAGAGATCCCAAACATATTGAATCACTTCTGAATGAGTGTGTTATTAAAATGCTGTTGACATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207270 lncRNA upstream 7705 8806854 ~ 8810032 (+) True G153026
TU207260 lncRNA upstream 15076 8796506 ~ 8802661 (+) True G153022
TU207235 lncRNA upstream 113546 8703916 ~ 8704191 (+) True G153005
TU207226 lncRNA upstream 133320 8681431 ~ 8684417 (+) False mapk3
TU207224 lncRNA upstream 133896 8681431 ~ 8683841 (+) False mapk3
TU207309 lncRNA downstream 61529 8895639 ~ 8903846 (+) True G153049
TU207312 lncRNA downstream 61529 8895639 ~ 8903846 (+) False G153049
TU207322 lncRNA downstream 90477 8924587 ~ 8927470 (+) True G153058
TU207323 lncRNA downstream 90477 8924587 ~ 8938805 (+) False G153058
TU207336 lncRNA downstream 122929 8957039 ~ 9021495 (+) True G153067
XM_039824548.1 mRNA upstream 22736 8779616 ~ 8795001 (+) False cramp1
XM_039824546.1 mRNA upstream 22736 8780948 ~ 8795001 (+) True cramp1
XM_039824547.1 mRNA upstream 22736 8780948 ~ 8795001 (+) False cramp1
XM_039823667.1 mRNA upstream 78161 8733708 ~ 8739576 (+) True nme3
XM_039825902.1 mRNA downstream 5269 8839379 ~ 8845877 (+) True kcnj12b
XM_039825901.1 mRNA downstream 5269 8839379 ~ 8845877 (+) False kcnj12b
XM_039825139.1 mRNA downstream 22368 8856478 ~ 8860499 (+) False hspbp1
XM_039825140.1 mRNA downstream 22430 8856540 ~ 8860499 (+) False hspbp1
XM_039825138.1 mRNA downstream 22603 8856713 ~ 8860499 (+) True hspbp1
TU207249 other upstream 55155 8757246 ~ 8762582 (+) True G153016
TU207220 other upstream 115966 8696968 ~ 8701771 (+) True ypel3
XR_005641904.1 other upstream 132972 8666470 ~ 8684765 (+) False mapk3
TU207168 other upstream 368440 8445446 ~ 8449297 (+) False mcrip1
XR_005641789.1 other downstream 125138 8959248 ~ 8969045 (+) False eps8l1a
unassigned_transcript_719 other downstream 227206 9061316 ~ 9067135 (+) True LOC120574330
TU207609 other downstream 239761 9073871 ~ 9116603 (+) True G153245
unassigned_transcript_720 other downstream 247737 9081847 ~ 9086215 (+) True LOC120574580
unassigned_transcript_721 other downstream 267075 9101185 ~ 9101623 (+) True LOC120574615

Expression Profile