nme3 (nme3)


Basic Information

Item Value
gene id nme3
gene name nme3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8733708 ~ 8739576 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823666.1
TCATTTGGAACCTGTAAGAGCTGGCTGCTGCAGGAGGTCAGCTATGGGGCCGAGAAAAAGGTCACAGAGAGAAATACATGAACTTGAAGATTTGGTTTTTAAACATGCACGGATTGAAGAATCTGGCTGGACCGGTGTAAATGAACGCACCTTCATTGCTGTAAAACCAGATGGCGTGCAGCGGAAGCTGGTGGGAGAAATCGTGCGTCGCTTTGAAAAGAGAGGTTTCAAACTGGTGGGCCTCAAACTTGTGCAGGCATCCGAGGATCTTCTGAGGGAACACTACTGGGAACTGAGGAGTAAGCCTTTCTTTCAGGGATTGATAAGCTACATGAGCTCTGGACCAATCGTAGCAATGGTGTGGGAGGGTTTGGACGTGGTCAAGACCGCACGCAAGATGTTGGGAGAGACCAATCCTGCGGACTCGCTGCCTGGAACCATCCGAGGAGATTACTGTGTAGAAGTGGGCAGGAACGTGATCCACGGCAGTGACTCTGTGGAGAGCGCCCAGAAGGAAATCTCTCTGTGGTTTCGACAGAACGAGCTTCACTGCTGGGAGGACAACAGCAGCCACTGGATCTACAACTGACCGTTTACATGTGCTGTGTGTACTCCTGTAGGTAAACCAGTGTCTGTTTATATTGGTATCCTTACAAGATGGATCACATCATACCTCAGATACATATTTTTTGGCTTTATTAGCTTGTAGTCACATGGGAtgtccttttttttcaaaacatttattttgtatttatctgAACTACATTTCTGAGGTGAAATGACATTACAAAGCAAACATGGACTAACCGAGCAATACTCATTAACATGACGTGTCTGCTTCTGTTACAGTTTTCATTGTCGTCTTCCCGTTAGTCCAGACACTAGCTggtgtttacagtttttaagCAATAAGCTTGGAATGTGGAGCAATAAAAGGTTTAGATTCATGTTTATCGGGGGTTAACGCATCAGGGAATGGTAAGTGAATAGCTGCATTTAAATCCACCCTAAAGGTTGATTTCTAAAATATACATGTTTCTCCTGTAATAGTACTTGCATTGAAAACCCATTAACATGGGCGCAATTAACTAACACAATTATTGCCtttcaaacatgtttttcagtttcctgtaccttttttttaaattctgtaAGGGTGTAAAACAGATTGTCACATTACTTACGGAAAGTTTCAAAAATAAGACCCATAACAGCTTTCAATGAGCTTATTTTATAATTTGTCAGGCTTAGTTTCCAAATTTAAAGATACTGCACTGAAATAAGTACGCTAATATATTTAGTTCTATAAAGCTTTTAATTTCTCCAATAGCTGTTTTTGTCCCAAGATGCTGTATGAATTGTATTGGAATTgtcttaaaacaaataaaataaatcttatcaggaaatcattttaaaaaa
>XM_039823667.1
CTAAAAGTAACGTGCGCGCGTCCGTACGTCCCATTACTCCCTTCTTCAAGTGTCCTAATGGTCCTCCGTCTACCGGCGACAATGATTTGCCTGTTCTTGTCTATATTTTCTTACTTATTTCAGCCAGGCTGGACCGGTGTAAATGAACGCACCTTCATTGCTGTAAAACCAGATGGCGTGCAGCGGAAGCTGGTGGGAGAAATCGTGCGTCGCTTTGAAAAGAGAGGTTTCAAACTGGTGGGCCTCAAACTTGTGCAGGCATCCGAGGATCTTCTGAGGGAACACTACTGGGAACTGAGGAGTAAGCCTTTCTTTCAGGGATTGATAAGCTACATGAGCTCTGGACCAATCGTAGCAATGGTGTGGGAGGGTTTGGACGTGGTCAAGACCGCACGCAAGATGTTGGGAGAGACCAATCCTGCGGACTCGCTGCCTGGAACCATCCGAGGAGATTACTGTGTAGAAGTGGGCAGGAACGTGATCCACGGCAGTGACTCTGTGGAGAGCGCCCAGAAGGAAATCTCTCTGTGGTTTCGACAGAACGAGCTTCACTGCTGGGAGGACAACAGCAGCCACTGGATCTACAACTGACCGTTTACATGTGCTGTGTGTACTCCTGTAGGTAAACCAGTGTCTGTTTATATTGGTATCCTTACAAGATGGATCACATCATACCTCAGATACATATTTTTTGGCTTTATTAGCTTGTAGTCACATGGGAtgtccttttttttcaaaacatttattttgtatttatctgAACTACATTTCTGAGGTGAAATGACATTACAAAGCAAACATGGACTAACCGAGCAATACTCATTAACATGACGTGTCTGCTTCTGTTACAGTTTTCATTGTCGTCTTCCCGTTAGTCCAGACACTAGCTggtgtttacagtttttaagCAATAAGCTTGGAATGTGGAGCAATAAAAGGTTTAGATTCATGTTTATCGGGGGTTAACGCATCAGGGAATGGTAAGTGAATAGCTGCATTTAAATCCACCCTAAAGGTTGATTTCTAAAATATACATGTTTCTCCTGTAATAGTACTTGCATTGAAAACCCATTAACATGGGCGCAATTAACTAACACAATTATTGCCtttcaaacatgtttttcagtttcctgtaccttttttttaaattctgtaAGGGTGTAAAACAGATTGTCACATTACTTACGGAAAGTTTCAAAAATAAGACCCATAACAGCTTTCAATGAGCTTATTTTATAATTTGTCAGGCTTAGTTTCCAAATTTAAAGATACTGCACTGAAATAAGTACGCTAATATATTTAGTTCTATAAAGCTTTTAATTTCTCCAATAGCTGTTTTTGTCCCAAGATGCTGTATGAATTGTATTGGAATTgtcttaaaacaaataaaataaatcttatcaggaaatcattttaaaaaa

Function

symbol description
nme3 Predicted to enable nucleoside diphosphate kinase activity. Acts upstream of or within positive regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway. Is expressed in several structures, including brain; digestive system; male organism; pleuroperitoneal region; and tail bud. Orthologous to human NME3 (NME/NM23 nucleoside diphosphate kinase 3).

NR:

description
nucleoside diphosphate kinase 3 isoform X3

GO:

id name namespace
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0006183 GTP biosynthetic process biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function

KEGG:

id description
K00940 ndk, NME; nucleoside-diphosphate kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823666.1 False 1419 mRNA 0.41 5 8734375 8739576
XM_039823667.1 True 1421 mRNA 0.41 5 8733708 8739576

Neighbor

gene id symbol gene type direction distance location
mrps34 mrps34,LOC102799846 coding upstream 694 8730966 ~ 8733014 (+)
spsb3a spsb3,LOC104929506 coding upstream 3346 8723014 ~ 8730362 (+)
atp6v0ca LOC101062972,LOC107376678,LOC100705449,LOC104942726,LOC107101194 coding upstream 14165 8712815 ~ 8719543 (+)
LOC120574773 LOC101066234,LOC101079871,LOC107557552,LOC106676044,LOC106920718 coding upstream 23504 8704620 ~ 8710204 (+)
gdpd3a gdpd3,LOC104942728 coding upstream 39504 8685837 ~ 8694204 (+)
cramp1 cramp1 coding downstream 40040 8779616 ~ 8795001 (+)
LOC120574270 NA coding downstream 78161 8817737 ~ 8834110 (+)
kcnj12b LOC103375016,LOC104930358,LOC104942720 coding downstream 99803 8839379 ~ 8845877 (+)
hspbp1 hspbp1,LOC102791397 coding downstream 116902 8856478 ~ 8860499 (+)
aspdh aspdh coding downstream 124265 8863841 ~ 8866529 (+)
G153005 NA non-coding upstream 29517 8703916 ~ 8704191 (+)
G152991 NA non-coding upstream 80870 8651618 ~ 8652838 (+)
G152990 NA non-coding upstream 86286 8646923 ~ 8647422 (+)
G152981 NA non-coding upstream 104063 8628708 ~ 8629645 (+)
G152973 LOC104929519,LOC103375241,LOC102212394,LOC101477022,LOC104948534,LOC102794201,LOC102305637 non-coding upstream 221914 8506326 ~ 8511794 (+)
G153022 NA non-coding downstream 56930 8796506 ~ 8802661 (+)
G153026 tmem11 non-coding downstream 67278 8806854 ~ 8810032 (+)
G153049 NA non-coding downstream 156063 8895639 ~ 8903846 (+)
G153058 LOC104930346,LOC102232733,LOC102793338,LOC101069507,LOC103469087 non-coding downstream 185011 8924587 ~ 8938805 (+)
G153067 NA non-coding downstream 217463 8957039 ~ 9021495 (+)
ypel3 ypela,ypel3,LOC106600728,LOC103040367,LOC105012807,LOC104942727,LOC108411043,LOC103393221,LOC107686999 other upstream 31937 8696899 ~ 8701771 (+)
mapk3 mapk3,LOC104942729 other upstream 48943 8666470 ~ 8684765 (+)
mcrip1 mcrip1 other upstream 284403 8445420 ~ 8449305 (+)
G152892 NA other upstream 605727 8127265 ~ 8127981 (+)
emp2 emp2 other upstream 1376870 7339985 ~ 7356838 (+)
G153016 NA other downstream 17670 8757246 ~ 8762582 (+)
eps8l1a eps8l1 other downstream 219672 8959248 ~ 8969045 (+)
asphd1 asphd1,LOC103374850,LOC102795844,LOC102314131 other downstream 297325 9036901 ~ 9042045 (+)
G153245 NA other downstream 334295 9073871 ~ 9116603 (+)
LOC120574336 NA other downstream 383030 9122606 ~ 9123105 (+)

Expression


Co-expression Network