RNA id: XM_039823667.1


Basic Information

Item Value
RNA id XM_039823667.1
length 1421
RNA type mRNA
GC content 0.41
exon number 5
gene id nme3
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8733708 ~ 8739576 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAAAAGTAACGTGCGCGCGTCCGTACGTCCCATTACTCCCTTCTTCAAGTGTCCTAATGGTCCTCCGTCTACCGGCGACAATGATTTGCCTGTTCTTGTCTATATTTTCTTACTTATTTCAGCCAGGCTGGACCGGTGTAAATGAACGCACCTTCATTGCTGTAAAACCAGATGGCGTGCAGCGGAAGCTGGTGGGAGAAATCGTGCGTCGCTTTGAAAAGAGAGGTTTCAAACTGGTGGGCCTCAAACTTGTGCAGGCATCCGAGGATCTTCTGAGGGAACACTACTGGGAACTGAGGAGTAAGCCTTTCTTTCAGGGATTGATAAGCTACATGAGCTCTGGACCAATCGTAGCAATGGTGTGGGAGGGTTTGGACGTGGTCAAGACCGCACGCAAGATGTTGGGAGAGACCAATCCTGCGGACTCGCTGCCTGGAACCATCCGAGGAGATTACTGTGTAGAAGTGGGCAGGAACGTGATCCACGGCAGTGACTCTGTGGAGAGCGCCCAGAAGGAAATCTCTCTGTGGTTTCGACAGAACGAGCTTCACTGCTGGGAGGACAACAGCAGCCACTGGATCTACAACTGACCGTTTACATGTGCTGTGTGTACTCCTGTAGGTAAACCAGTGTCTGTTTATATTGGTATCCTTACAAGATGGATCACATCATACCTCAGATACATATTTTTTGGCTTTATTAGCTTGTAGTCACATGGGAtgtccttttttttcaaaacatttattttgtatttatctgAACTACATTTCTGAGGTGAAATGACATTACAAAGCAAACATGGACTAACCGAGCAATACTCATTAACATGACGTGTCTGCTTCTGTTACAGTTTTCATTGTCGTCTTCCCGTTAGTCCAGACACTAGCTggtgtttacagtttttaagCAATAAGCTTGGAATGTGGAGCAATAAAAGGTTTAGATTCATGTTTATCGGGGGTTAACGCATCAGGGAATGGTAAGTGAATAGCTGCATTTAAATCCACCCTAAAGGTTGATTTCTAAAATATACATGTTTCTCCTGTAATAGTACTTGCATTGAAAACCCATTAACATGGGCGCAATTAACTAACACAATTATTGCCtttcaaacatgtttttcagtttcctgtaccttttttttaaattctgtaAGGGTGTAAAACAGATTGTCACATTACTTACGGAAAGTTTCAAAAATAAGACCCATAACAGCTTTCAATGAGCTTATTTTATAATTTGTCAGGCTTAGTTTCCAAATTTAAAGATACTGCACTGAAATAAGTACGCTAATATATTTAGTTCTATAAAGCTTTTAATTTCTCCAATAGCTGTTTTTGTCCCAAGATGCTGTATGAATTGTATTGGAATTgtcttaaaacaaataaaataaatcttatcaggaaatcattttaaaaaa

Function

GO: NA

KEGG:

id description
K00940 ndk, NME; nucleoside-diphosphate kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207235 lncRNA upstream 29517 8703916 ~ 8704191 (+) True G153005
TU207226 lncRNA upstream 49291 8681431 ~ 8684417 (+) False mapk3
TU207224 lncRNA upstream 49867 8681431 ~ 8683841 (+) False mapk3
TU207214 lncRNA upstream 80870 8651618 ~ 8652838 (+) True G152991
TU207213 lncRNA upstream 86286 8646923 ~ 8647422 (+) True G152990
TU207260 lncRNA downstream 56930 8796506 ~ 8802661 (+) True G153022
TU207270 lncRNA downstream 67278 8806854 ~ 8810032 (+) True G153026
TU207309 lncRNA downstream 156063 8895639 ~ 8903846 (+) True G153049
TU207312 lncRNA downstream 156063 8895639 ~ 8903846 (+) False G153049
TU207322 lncRNA downstream 185011 8924587 ~ 8927470 (+) True G153058
XM_039823680.1 mRNA upstream 694 8730966 ~ 8733014 (+) False mrps34
XM_039823682.1 mRNA upstream 694 8731118 ~ 8733014 (+) True mrps34
XM_039825787.1 mRNA upstream 3346 8723196 ~ 8730362 (+) False spsb3a
XM_039824548.1 mRNA downstream 40040 8779616 ~ 8795001 (+) False cramp1
XM_039824546.1 mRNA downstream 41372 8780948 ~ 8795001 (+) True cramp1
XM_039824547.1 mRNA downstream 41372 8780948 ~ 8795001 (+) False cramp1
XM_039824556.1 mRNA downstream 78161 8817737 ~ 8834110 (+) True LOC120574270
XM_039824558.1 mRNA downstream 78161 8817737 ~ 8834110 (+) False LOC120574270
TU207220 other upstream 31937 8696968 ~ 8701771 (+) True ypel3
XR_005641904.1 other upstream 48943 8666470 ~ 8684765 (+) False mapk3
TU207168 other upstream 284411 8445446 ~ 8449297 (+) False mcrip1
TU207169 other upstream 284411 8445446 ~ 8449297 (+) False mcrip1
TU207102 other upstream 605727 8127265 ~ 8127981 (+) True G152892
TU207249 other downstream 17670 8757246 ~ 8762582 (+) True G153016
XR_005641789.1 other downstream 219672 8959248 ~ 8969045 (+) False eps8l1a
unassigned_transcript_719 other downstream 321740 9061316 ~ 9067135 (+) True LOC120574330
TU207609 other downstream 334295 9073871 ~ 9116603 (+) True G153245
unassigned_transcript_720 other downstream 342271 9081847 ~ 9086215 (+) True LOC120574580

Expression Profile