RNA id: TU207102


Basic Information

Item Value
RNA id TU207102
length 717
RNA type TUCP
GC content 0.42
exon number 1
gene id G152892
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8127265 ~ 8127981 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttaacaaataaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgattcaatgttgacctaaatgactaatgatgataaatagaatccagctgtgtgtaatcaagtctccgtataaatgcacctgctctgtgatagtctcagaggtccgtgtaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtggagaagtttaaagctggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactacaaatctacgaagacccggctgtccctctaaactttcagctcatacaatgagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatactgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgtcgtttaaagtttgccaaaagccacctgggagacacaccaaacatgtggaagaaggtgctgtggtcagatgaaaccaaaatcgaactttttggcaacaatgcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206999 lncRNA upstream 14651 8112386 ~ 8112614 (+) True G152826
TU206973 lncRNA upstream 33418 8019930 ~ 8093847 (+) True G152807
TU206992 lncRNA upstream 35059 8088994 ~ 8092206 (+) False G152823
TU206993 lncRNA upstream 35059 8088994 ~ 8092206 (+) True G152823
TU206995 lncRNA upstream 35059 8088994 ~ 8092206 (+) False G152823
TU207131 lncRNA downstream 125541 8253522 ~ 8254810 (+) True G152916
TU207157 lncRNA downstream 258535 8386516 ~ 8386743 (+) True G152942
XR_005641949.1 lncRNA downstream 368366 8496347 ~ 8501904 (+) True LOC120575098
TU207190 lncRNA downstream 368532 8496513 ~ 8501898 (+) False LOC120575098
TU207193 lncRNA downstream 378345 8506326 ~ 8509364 (+) False G152973
XM_039825022.1 mRNA upstream 15208 8102205 ~ 8112057 (+) True LOC120574676
XM_039825023.1 mRNA upstream 15208 8102205 ~ 8112057 (+) False LOC120574676
XM_039825024.1 mRNA upstream 15208 8102207 ~ 8112057 (+) False LOC120574676
XM_039825371.1 mRNA upstream 94250 8016997 ~ 8033015 (+) True LOC120574880
XM_039825372.1 mRNA upstream 96384 8016996 ~ 8030881 (+) False LOC120574880
XM_039825837.1 mRNA downstream 21372 8149353 ~ 8210405 (+) True LOC120575181
XM_039825361.1 mRNA downstream 108161 8236142 ~ 8252307 (+) True LOC120574874
XM_039825862.1 mRNA downstream 290860 8418841 ~ 8428829 (+) False pecam1
XM_039825861.1 mRNA downstream 290861 8418842 ~ 8428829 (+) True pecam1
XM_039823720.1 mRNA downstream 313207 8441188 ~ 8444379 (+) True LOC120573853
XR_005642011.1 other upstream 53960 8073236 ~ 8073305 (+) True LOC120575520
XR_005641999.1 other upstream 54184 8073008 ~ 8073081 (+) True LOC120575508
TU206790 other upstream 770427 7339993 ~ 7356838 (+) True emp2
TU206798 other upstream 853922 7270993 ~ 7273343 (+) False dexi
TU206243 other upstream 2173900 5950424 ~ 5953365 (+) False chst12a
TU207168 other downstream 317465 8445446 ~ 8449297 (+) False mcrip1
TU207169 other downstream 317465 8445446 ~ 8449297 (+) False mcrip1
XR_005641904.1 other downstream 538489 8666470 ~ 8684765 (+) False mapk3
TU207220 other downstream 568987 8696968 ~ 8701771 (+) True ypel3
TU207249 other downstream 629265 8757246 ~ 8762582 (+) True G153016

Expression Profile