RNA id: XR_005641949.1


Basic Information

Item Value
RNA id XR_005641949.1
length 1604
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC120575098
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8496347 ~ 8501904 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tagaCGAGCCACTTCAACAACGTACTAACTACCTTGCTGGAAATGGAAATGCTGTCTCCAAAGGCATGAGAAAGAGGGGAGCAGTTTCACCAGTGGAGGCGGGGAACGCCAGAGAGGCACAAAAAGACTCTGTGAAGCAACAGTCACTCCCATGCAGGACTGCTAAAGAGAGAACAGCCTCGCAGGCAGAGAAACTAAAGCGAGGCGCACAGTCAAACGGCAAAGCAGACAACTACTCTGCAACCAAAAACCACAAAACGAGAAGAGCAAGAAACTTGAGGACCAAAGAAGAGAACGATTTAAGAGAAGCATGAAAGGGATTTTGTGCCATCTCACTTTTCCTCCACTCCACATGCAGAGTATCATCAGTACCTGAGGAATTATCACTCCTAACCTTAATCTCAACCTGACTGCTTATCTCCGTCTGTTAGTCTCCACCTCTGAGTGACGTACTGCACATTTTAACAACAGACtgacatatataaaacacactCAGCAGGTTAACTCCTTCAGGGGGAGGCATGTTCATGTTCATCactgcctcctcctcatcaaGTGGTCGGCTTACTTCGGTTCCGTAACTTTTGCAGGTCAGCTTGGGCTGGGCTGAGCGTGTGAAAACAACAACCGAGACTCTCATAGGATGGATGTCAGAGAGGAGACGCTGAACACCCTGAACAGGATCTGGGTCAAGCTGCAGGGTCTGCCCAACGCCGACCCCATAGAGCTGGGAGCTTTCTTTGTCATCTTAACCTTCATCTTGGTGGTCCTGCTCATGACAGCGCTGGCGTGCatgacctgctgctgctgctgctgccgtcgCAAAACCAAGACGAGGGGATCGATCATTTGAGCAAATGTGCTCCACACAAGGAAACATGAcaggagacagaaacacaacatcGAGCTTTCTCTCTCAAGCATAATGTCATGGCCATATACTTAATAGATTATACAGCCTGATACAGGGTGTGTTTAGTGGCACTGAAGGAGCCTTGCCCttgaacaaacaaaacacctGACAAACACAGAGATGGCTGTCCTGACAAACACACCTGCTAAAGCTTTCAGGTTTTCAGGACGCTCTACAATCCTTGGAGCATCCCTGCGCTTTACAGGGCAACAACATCAGGAAACCCAAAGTGACTTGCATAAtgcatataaatataaataataaatggaaTATGAGCTACAAAGATGTGTAgaataattttttaaaaattgcAGTGAGTTGCACAGTGAGATATGAAGGGGAGAGCCAAAttggtttgtttatgttttttttctaaacctaactatGTGTCATTCTTAAGGAACGATAATTGGCATTCAGTGTTAGGTAAGATCCTTCTAGGGGGAAGTACTTATGTTGTGACATAAGTCACAACAAAGCATAAAACAGAGATCAAGTCTGCCCtctgctgtacacaaaccagaATGAACtatgatttaatttttaaaaaaggtaCAGCATGCATGTAATGACAGTTATGTTCTAATGTATAAAGCTGCATGTGTATATTATGTGCAAGGGGGGAGACATTATGTAATGATGCGATACTTTGATTACACTTTTGTATGCAATAAACAAAATGGGACTTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207157 lncRNA upstream 109604 8386516 ~ 8386743 (+) True G152942
TU207131 lncRNA upstream 241537 8253522 ~ 8254810 (+) True G152916
TU206999 lncRNA upstream 383733 8112386 ~ 8112614 (+) True G152826
TU206993 lncRNA upstream 404141 8088994 ~ 8092206 (+) True G152823
TU207193 lncRNA downstream 4422 8506326 ~ 8509364 (+) False G152973
TU207194 lncRNA downstream 4422 8506326 ~ 8511794 (+) True G152973
TU207204 lncRNA downstream 126804 8628708 ~ 8629645 (+) True G152981
TU207213 lncRNA downstream 145019 8646923 ~ 8647422 (+) True G152990
TU207214 lncRNA downstream 149714 8651618 ~ 8652838 (+) True G152991
XM_039825034.1 mRNA upstream 23935 8455189 ~ 8472412 (+) True arhgdia
XM_039825520.1 mRNA upstream 43268 8449968 ~ 8453079 (+) True alyref
XM_039826255.1 mRNA upstream 47042 8445420 ~ 8449305 (+) True mcrip1
XM_039826256.1 mRNA upstream 47042 8445428 ~ 8449305 (+) False mcrip1
XM_039823720.1 mRNA upstream 51968 8441188 ~ 8444379 (+) True LOC120573853
XM_039825329.1 mRNA downstream 21225 8523129 ~ 8537979 (+) True xylt2
XM_039825330.1 mRNA downstream 21225 8523129 ~ 8537979 (+) False xylt2
XM_039825820.1 mRNA downstream 36686 8538590 ~ 8556285 (+) False LOC120575169
XM_039825821.1 mRNA downstream 42529 8544433 ~ 8556285 (+) True LOC120575169
XM_039825488.1 mRNA downstream 55915 8557819 ~ 8588203 (+) True LOC120574961
TU207168 other upstream 47050 8445446 ~ 8449297 (+) False mcrip1
TU207169 other upstream 47050 8445446 ~ 8449297 (+) False mcrip1
TU207102 other upstream 368366 8127265 ~ 8127981 (+) True G152892
XR_005642011.1 other upstream 423042 8073236 ~ 8073305 (+) True LOC120575520
XR_005641999.1 other upstream 423266 8073008 ~ 8073081 (+) True LOC120575508
XR_005641904.1 other downstream 164566 8666470 ~ 8684765 (+) False mapk3
TU207220 other downstream 195064 8696968 ~ 8701771 (+) True ypel3
TU207249 other downstream 255342 8757246 ~ 8762582 (+) True G153016
XR_005641789.1 other downstream 457344 8959248 ~ 8969045 (+) False eps8l1a
unassigned_transcript_719 other downstream 559412 9061316 ~ 9067135 (+) True LOC120574330

Expression Profile