RNA id: XM_039825820.1


Basic Information

Item Value
RNA id XM_039825820.1
length 2515
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC120575169
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8538590 ~ 8556285 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGCTGAAGGAGAGGAAGTTTAAACATTTAGTTTATTTGCAGAAGCTCGTCTGCTTTTGAACAGAAAACGCGTTTAAACTAGAGGACAAACGAGATGGAGGACACCTGTGAAACGCAGAAGCAGGAGGAGGCGAAGCTGGTTTCCTCGGACAGTGCTTACGGGTCATCTGCCGTGGACACGGACACGGAGGACGGACAGACTCCCACGTCCAACACCTTCCCCTATAATGAAGACCTGACGCACAAGACCATTCTCGTGGGAGACAGCGGAGTGGGCAAGACCTCTCTGCTGGTTCAGTTCGACCAGGGCAAGTTCATCGCAGGGTCCTTCACCGCCACTGTCGGCATTGGTTTCACAAATAAAGTGGTGGATGTCGACAACCTGAAAGTCAAACTCCAGATCTGGGATACAGCTGGCCAAGAGAGATTCCGAAGCGTAACGCACGCCTACTACAGAGATGCCCAGGcGTTACTTTTGCTTTATGATATCACCAGCAAGCTGTCGTTTGACAATATCAGGGCTTGGCTGACTGAAATACACGAGTATGCCCAGAAGGATGTGGTCATCATGTTGCTCGGCAACAAGGCAGACATGGTTGCAGATAGGGTCGTGAAGAAGGAGGATGGAGAGAAGCTGGCGAAGGAGTATGGTGTACCATTTATGGAGACCAGTGCGAAGACAGGAGTCAATGTGGAGCTGGCCTTTCTTGCTATAGCAAAGGAGCTGAAGCACAGAGCGACACAGCAGCAGAATGAGCCCAAGTTCCAGATACACGACTACATCGAGTCTCAGAAGCACAAGTCTAGCTGCTGTGGACTCATGTAACTGATCCTGATCACCaggcagaaagagacacacagagagagagagagaaagaaagggaggcagggagggtGTAGGAacgagatatatatatatatatttaaaaaagtcagCTCTCTTACGAAAAAGCCAATGCCAGCACCAAACCTGAGAAGCAGACAACCTCGCCTTCTCCACTGAGCATTTAGCTCGAATGGAAAGTTAATCTGGATTGGCCGCCATCCCTTATCTAAAATGTGAATTTAAATCTATTTTATGTCATGCGTAGAAGTGTTTGTGGTCTTTGTGGTGACAGTTGTATTAAACTACAAGTCAGGAGTTGCAATCTGAAATGCTATATCCATCTGCAGGGACAAACATATATGTTTATCTTTCTATTCTGCATAGGTGGAAACTCAACATTTGGGAGTTTGGATGAAAAATATGGCACCCAAGTGATTTGTGCGGATCCAAAGAGTTTAATATTTGGGGAGAGGAGATGTTTGCGCTCCACATGGGCAGACACATTGCACTTAAAGGGTAACAACACCCTCAAATTCTGCTTGAACTTGGAGTGTCAGTACCAAATATCTATCAGTTTTCCATGGGCCCATGTGATGTGTTTACTGCCACTGAGGAGAAATAAATCTGGCTCATGCTAATGCTAGCAGGGGTCAACAAGCATAATACAACTCAGAGTTTTGTCTATTTTGTCACAGTTAAAGAGGAGCCAGAGAATACGGCTGAACCAAACATTCAAATCCGAGCAGACAGAAACATAATACCTGTATAAACATCATATGCCAACAAGAGTCTTTGTGATTTATGTGTACTGCACATAGTTCAGAACCCAGCTCGACTTCATAGTTTTCCGTTGCTGTTAAACCGAGCTTCAGTAACGTAACCTTGTCCACAGTGAGCTTAATTACTTGGGCTCTGTTTGGTCCTGCGGCAGAAACTGAAGTCCGGCCCTATTCTTAGAACtgtcgccttttttttttatcttgcagTTTACAGGCCCGACTTTTGATAAATGGCAGTTTTATATGAACAATCAATACGATTGTTGATGTCGATATAGCATTTTGCCCTGCAGCTCTTACTTTGTTTCTATCCCTGTTTGACCAGGCTGTGAACTGAATCTCTTTAGCCTGTTCTTTGATAATTTGTGTGCGTTTGAGAAGTGGACTTCAGTGTCACAGTCAGATTGTAGCTATAAAATGATTCCATCTGTTCACATCTGTACTGCTGTTAGATAGAATAAAGCCAACTTTTTAAGGGCGCTCGCccactgtgtgtctgtctgtactaCATTCAATTCAGGGCCACTGAAACTTCATTCAAAGTACTGTACATGTAATAGTGCTGGAGGATCATCCCAATGTTGCATCAGGCTTCACACAAAATGATAATTATCATTATTTTCACATCTTTGGTTCGAGATTCCTAAGCATGCTATTTGCCTtttagcattcacacacacagagggcacTCCCAAACATTGTTGCGTCTCCTTTAACGATGGATGTTGTTGTACCGAAGCTGTATTTGCTCACGCATCGTGTAACTTGTTTCTTTGTACAATGTTCATTATGAATTGCTCGATGTCACATTTGTCCCTCTTCTGAGGCGTCACGGTGGGAGTGTCACAAAGTGCCATGAAAAAGTGCTTTGTTATCATGTTGtataaaaaaagtatattttgtaatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207194 lncRNA upstream 26796 8506326 ~ 8511794 (+) True G152973
TU207193 lncRNA upstream 29226 8506326 ~ 8509364 (+) False G152973
XR_005641949.1 lncRNA upstream 36686 8496347 ~ 8501904 (+) True LOC120575098
TU207190 lncRNA upstream 36692 8496513 ~ 8501898 (+) False LOC120575098
TU207157 lncRNA upstream 151847 8386516 ~ 8386743 (+) True G152942
TU207204 lncRNA downstream 72423 8628708 ~ 8629645 (+) True G152981
TU207213 lncRNA downstream 90638 8646923 ~ 8647422 (+) True G152990
TU207214 lncRNA downstream 95333 8651618 ~ 8652838 (+) True G152991
TU207224 lncRNA downstream 125146 8681431 ~ 8683841 (+) False mapk3
TU207226 lncRNA downstream 125146 8681431 ~ 8684417 (+) False mapk3
XM_039825329.1 mRNA upstream 611 8523129 ~ 8537979 (+) True xylt2
XM_039825330.1 mRNA upstream 611 8523129 ~ 8537979 (+) False xylt2
XM_039825034.1 mRNA upstream 66178 8455189 ~ 8472412 (+) True arhgdia
XM_039825520.1 mRNA upstream 85511 8449968 ~ 8453079 (+) True alyref
XM_039826255.1 mRNA upstream 89285 8445420 ~ 8449305 (+) True mcrip1
XM_039825488.1 mRNA downstream 1534 8557819 ~ 8588203 (+) True LOC120574961
XM_039824669.1 mRNA downstream 45319 8601604 ~ 8626351 (+) False atp2a1
XM_039824668.1 mRNA downstream 45327 8601612 ~ 8626351 (+) True atp2a1
XM_039825207.1 mRNA downstream 110185 8666470 ~ 8684765 (+) True mapk3
XM_039825209.1 mRNA downstream 129552 8685837 ~ 8694204 (+) True gdpd3a
TU207168 other upstream 89293 8445446 ~ 8449297 (+) False mcrip1
TU207169 other upstream 89293 8445446 ~ 8449297 (+) False mcrip1
TU207102 other upstream 410609 8127265 ~ 8127981 (+) True G152892
XR_005642011.1 other upstream 465285 8073236 ~ 8073305 (+) True LOC120575520
XR_005641999.1 other upstream 465509 8073008 ~ 8073081 (+) True LOC120575508
XR_005641904.1 other downstream 110185 8666470 ~ 8684765 (+) False mapk3
TU207220 other downstream 140683 8696968 ~ 8701771 (+) True ypel3
TU207249 other downstream 200961 8757246 ~ 8762582 (+) True G153016
XR_005641789.1 other downstream 402963 8959248 ~ 8969045 (+) False eps8l1a
unassigned_transcript_719 other downstream 505031 9061316 ~ 9067135 (+) True LOC120574330

Expression Profile